Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NVB75_RS11650 Genome accession   NZ_CP102929
Coordinates   2604462..2605097 (-) Length   211 a.a.
NCBI ID   WP_063033914.1    Uniprot ID   -
Organism   Pseudomonas sp. CBS     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599462..2610097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVB75_RS11620 (NVB75_11620) murB 2600576..2601595 (-) 1020 WP_258347222.1 UDP-N-acetylmuramate dehydrogenase -
  NVB75_RS11625 (NVB75_11625) - 2601592..2602056 (-) 465 WP_010165863.1 low molecular weight protein-tyrosine-phosphatase -
  NVB75_RS11630 (NVB75_11630) kdsB 2602056..2602820 (-) 765 WP_258347223.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NVB75_RS11635 (NVB75_11635) - 2602817..2603002 (-) 186 WP_003174668.1 Trm112 family protein -
  NVB75_RS11640 (NVB75_11640) lpxK 2603027..2604037 (-) 1011 WP_258347224.1 tetraacyldisaccharide 4'-kinase -
  NVB75_RS11645 (NVB75_11645) - 2604037..2604465 (-) 429 WP_258347225.1 biopolymer transporter ExbD -
  NVB75_RS11650 (NVB75_11650) exbB 2604462..2605097 (-) 636 WP_063033914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NVB75_RS11655 (NVB75_11655) comA 2605207..2607432 (-) 2226 WP_258347226.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NVB75_RS11660 (NVB75_11660) - 2607568..2608083 (+) 516 WP_258347227.1 DUF2062 domain-containing protein -
  NVB75_RS11665 (NVB75_11665) - 2608087..2609457 (-) 1371 Protein_2319 histidine kinase sensor domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.02 Da        Isoelectric Point: 7.3613

>NTDB_id=719786 NVB75_RS11650 WP_063033914.1 2604462..2605097(-) (exbB) [Pseudomonas sp. CBS]
MWELVKSGGWMMLPIILSSIAALGIIAERLWTLRASRVTPDHLLGQVWGWIKNKQLDKAKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=719786 NVB75_RS11650 WP_063033914.1 2604462..2605097(-) (exbB) [Pseudomonas sp. CBS]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCACTCGGCATCATCGC
CGAACGCCTGTGGACCCTGCGTGCCAGCCGTGTAACACCTGACCACCTGCTGGGCCAGGTCTGGGGCTGGATCAAGAACA
AGCAACTGGACAAGGCAAAACTCAAGGAGCTGCGCGCCAACTCGCCCCTGGGTGAAATCCTCGCCGCCGGCCTCGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAGGCCGCTGCCCGGGTCATCCATGAGCTGGAGCGCTACAT
CAATGCCCTGGGCACCATTGCCGCCATGGCGCCATTGCTCGGTTTGCTCGGTACGGTACTGGGCATGATCGATATCTTCA
GCTCCTTCATGGGCTCGGGCATGACCACCAACGCCGCCGTGCTGGCCGGTGGTATTTCCAAGGCCTTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGCTTCCTGCAACGGCGCATCGACGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGTTGGTGGAAGTGGTGCAGGGCGACCGTGACGTAGACCTGGTTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863