Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MHI65_RS05520 Genome accession   NZ_CP102917
Coordinates   1146592..1147545 (+) Length   317 a.a.
NCBI ID   WP_003361009.1    Uniprot ID   -
Organism   Clostridium botulinum strain PA9508B     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141592..1152545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI65_RS05495 (MHI65_001097) - 1141746..1141982 (+) 237 WP_003361003.1 SHOCT domain-containing protein -
  MHI65_RS05500 (MHI65_001098) - 1142242..1142943 (+) 702 WP_003361004.1 response regulator transcription factor -
  MHI65_RS05505 (MHI65_001099) - 1142943..1144349 (+) 1407 WP_003361005.1 sensor histidine kinase -
  MHI65_RS05510 (MHI65_001100) - 1144666..1145352 (-) 687 WP_003361006.1 DNA alkylation repair protein -
  MHI65_RS05515 (MHI65_001101) - 1145588..1146346 (-) 759 WP_033063195.1 helix-turn-helix domain-containing protein -
  MHI65_RS05520 (MHI65_001102) ceuB 1146592..1147545 (+) 954 WP_003361009.1 ABC transporter permease Machinery gene
  MHI65_RS05525 (MHI65_001103) - 1147535..1148484 (+) 950 Protein_1064 iron chelate uptake ABC transporter family permease subunit -
  MHI65_RS05530 (MHI65_001104) - 1148481..1149236 (+) 756 WP_003361010.1 ABC transporter ATP-binding protein -
  MHI65_RS05535 (MHI65_001105) - 1149306..1150250 (+) 945 WP_061317385.1 siderophore ABC transporter substrate-binding protein -
  MHI65_RS05540 (MHI65_001106) - 1150452..1151453 (+) 1002 WP_003361012.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34902.31 Da        Isoelectric Point: 10.0382

>NTDB_id=719693 MHI65_RS05520 WP_003361009.1 1146592..1147545(+) (ceuB) [Clostridium botulinum strain PA9508B]
MKKRYLILALIILSICSIFIGVKDISFIDIFNSDDVKLKVLLISRIPRLISIIIVGVSMSIAGLIMQQISRNKFVSPDTA
STIDSAKLGVLVALMIFPSATLTEKMIVSFIFSLLGTFLFMKILKKIKVKNSIFIPLVGIMLGNIIDSITTFFAYKYNLI
QSIASWLQGDFSLIIKGNYELIYFSLPLVVIAFIYANKFTVAGMGEDFSKNLGVNYNRIINIGLVIVALISSLVVITVGK
IPFLGLIVPNIVTLYKGDNLKNSLCSTALLGAVFLLGCDILGRLVIYPYEISIGLVVGVIGSMVFLYLLFRRNGNEV

Nucleotide


Download         Length: 954 bp        

>NTDB_id=719693 MHI65_RS05520 WP_003361009.1 1146592..1147545(+) (ceuB) [Clostridium botulinum strain PA9508B]
ATGAAAAAGAGATATTTAATTTTAGCATTAATTATTTTATCTATTTGTTCAATATTTATTGGAGTAAAAGATATTAGCTT
TATAGATATATTTAATTCAGATGATGTGAAGCTTAAGGTATTATTAATCAGTAGAATCCCAAGACTTATAAGTATTATTA
TAGTAGGGGTTAGTATGAGTATAGCAGGACTTATTATGCAACAAATAAGTCGGAATAAATTTGTATCTCCAGATACAGCT
TCAACTATAGATAGTGCAAAGCTTGGGGTTTTAGTTGCTTTAATGATATTTCCTTCAGCAACTCTTACTGAAAAAATGAT
AGTTTCCTTTATATTTTCTTTATTAGGTACATTCTTATTTATGAAAATTTTAAAGAAAATAAAAGTTAAAAATTCTATCT
TCATACCACTTGTAGGTATAATGCTTGGAAATATAATAGATTCAATAACTACGTTTTTTGCATATAAATACAATCTTATT
CAAAGTATTGCCTCTTGGCTTCAGGGTGATTTTTCTTTAATTATTAAAGGAAATTATGAACTTATATATTTTAGTCTACC
ACTTGTAGTCATAGCCTTTATTTATGCTAATAAATTTACAGTAGCAGGTATGGGAGAGGATTTTTCCAAGAATTTAGGTG
TTAATTATAACAGAATCATAAATATAGGACTTGTAATAGTAGCATTAATATCTTCACTAGTAGTTATTACTGTGGGAAAA
ATACCATTTCTAGGTCTTATAGTACCTAATATAGTTACTCTTTATAAAGGGGATAATTTAAAAAATAGTCTTTGTAGTAC
AGCATTGCTTGGAGCAGTATTTCTCTTAGGCTGTGACATATTAGGTAGGCTAGTTATTTATCCCTATGAGATATCTATAG
GACTTGTAGTTGGGGTTATAGGAAGTATGGTATTCCTTTATCTCTTGTTTAGGAGGAATGGCAATGAAGTGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.447

98.107

0.505