Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ/pilQ   Type   Machinery gene
Locus tag   PT012_RS09250 Genome accession   NZ_CP117820
Coordinates   2005513..2007423 (-) Length   636 a.a.
NCBI ID   WP_038210668.1    Uniprot ID   A0A1W6R5A3
Organism   Xylella fastidiosa subsp. multiplex strain ICMP 8740     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2000513..2012423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT012_RS09240 (PT012_09240) - 2001705..2003324 (-) 1620 Protein_1803 phosphoethanolamine transferase -
  PT012_RS09245 (PT012_09245) - 2003360..2004118 (-) 759 WP_004086593.1 phosphatase PAP2 family protein -
  PT012_RS09250 (PT012_09250) comQ/pilQ 2005513..2007423 (-) 1911 WP_038210668.1 type IV pilus secretin PilQ Machinery gene
  PT012_RS09255 (PT012_09255) - 2007423..2007952 (-) 530 Protein_1806 pilus assembly protein PilP -
  PT012_RS09260 (PT012_09260) - 2007949..2008617 (-) 669 WP_004086596.1 type 4a pilus biogenesis protein PilO -
  PT012_RS09265 (PT012_09265) - 2008614..2009279 (-) 666 WP_004086597.1 PilN domain-containing protein -
  PT012_RS09270 (PT012_09270) pilM 2009279..2010337 (-) 1059 WP_004086598.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 636 a.a.        Molecular weight: 68752.73 Da        Isoelectric Point: 8.6901

>NTDB_id=719461 PT012_RS09250 WP_038210668.1 2005513..2007423(-) (comQ/pilQ) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
MIDLRDRMMTLFEVLGLRFVRRIASLRVCEIWVCIAFAWCCIPGTVSAENKQAIPVAKATNAPLSVSKIDFKRGDDGSGR
LILKFDGQGATPDLRTQGGAVLVDLGTAVLPTVLQRQINVVDFATPVQRIDAKPMGKGAQLVLSTKGAFESLAYQTGDEY
VVEIVPRKGEAAMGGAITPESVSKSAAKISAQGYSGRPVTFNFQDVPVRTVLQLIADESNLNIVASDTVQGNVTLRLINV
PWDQALDIVLRAKGLDKRRDEKVIWVAPQQELAKYEQEKEDARIAIENREGLITDYVQINYHSATVIFKALTEAKGMGGG
GNGTPNNNSDDAFLSPRGRLVADERTNTLMISDIPKKVAQMRTLIQHIDRPVDQVLIEGRIVIATDSFARDLGAKFGVGA
ASRFSDNTATIGSNVTAGSSTSATRGLNVDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTA
NQREGYIKQGKEIGYVTITGGVAGAQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITIANFGTVPTLNK
REINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRGKDKQKAELLIFVTPKVLRVANATAAVH

Nucleotide


Download         Length: 1911 bp        

>NTDB_id=719461 PT012_RS09250 WP_038210668.1 2005513..2007423(-) (comQ/pilQ) [Xylella fastidiosa subsp. multiplex strain ICMP 8740]
ATGATTGATTTAAGGGATAGAATGATGACTTTATTTGAAGTCTTAGGCTTGCGTTTTGTTAGGCGTATAGCCTCGCTTCG
CGTATGTGAAATTTGGGTATGCATAGCTTTCGCTTGGTGTTGCATCCCAGGAACCGTATCGGCTGAAAACAAGCAAGCGA
TTCCAGTGGCTAAAGCTACCAATGCGCCACTAAGCGTTTCCAAAATCGATTTCAAACGTGGTGATGATGGCTCTGGCCGT
CTGATTTTGAAGTTTGATGGGCAGGGAGCCACTCCTGACCTGCGTACGCAGGGTGGCGCCGTGCTGGTTGACCTGGGGAC
AGCTGTGTTGCCGACTGTCTTGCAACGCCAGATCAACGTTGTTGACTTTGCTACCCCAGTGCAGCGTATCGACGCTAAGC
CTATGGGTAAGGGTGCACAACTTGTGTTGAGCACGAAGGGAGCGTTTGAGTCGCTTGCTTACCAGACAGGGGATGAATAC
GTGGTTGAAATTGTGCCACGCAAGGGAGAGGCTGCCATGGGTGGGGCGATCACCCCAGAATCGGTCAGTAAGTCCGCAGC
GAAGATTTCCGCACAAGGGTACAGTGGTCGTCCAGTAACGTTTAACTTCCAAGACGTTCCAGTACGAACGGTTTTGCAGT
TGATCGCTGATGAGTCCAACCTCAATATTGTTGCTTCCGACACTGTGCAAGGTAATGTCACTCTACGTTTGATTAATGTG
CCATGGGATCAAGCGCTCGACATCGTTTTGCGTGCTAAAGGATTGGATAAGCGCCGTGATGAGAAAGTAATTTGGGTTGC
GCCGCAACAGGAGCTTGCTAAATACGAGCAAGAAAAAGAGGACGCGCGGATCGCGATCGAAAATCGTGAGGGGTTAATTA
CCGATTATGTCCAAATAAATTATCATTCGGCCACGGTCATTTTTAAGGCACTGACAGAAGCCAAAGGTATGGGTGGGGGA
GGTAACGGTACACCTAATAATAATAGTGATGATGCTTTCTTATCGCCACGTGGTCGGCTTGTGGCTGATGAGCGCACTAA
TACGTTGATGATTAGTGATATTCCCAAGAAAGTTGCGCAAATGCGTACTCTTATCCAGCATATTGATCGTCCTGTGGACC
AAGTGTTGATTGAGGGCCGCATCGTGATCGCCACCGATAGCTTCGCGCGTGATTTGGGGGCCAAGTTCGGTGTTGGTGCT
GCTAGTCGTTTCAGCGATAACACTGCAACGATCGGTAGTAATGTGACTGCTGGCAGCTCCACATCGGCTACGCGGGGGCT
TAATGTTGATTTGGGCGGTCCGACCAACACCACTGCTTCAGTTCTTCCGAGTTTAGCCTACACTTTGCTTGGACCTAAAT
TTAATCTAGATCTTGAGCTTTCGGCATTGCAGCAGGAATCCCGTGGCGAGGTGATTTCAAACCCTCGTATTGTCACTGCA
AACCAGCGTGAGGGATATATCAAACAAGGTAAGGAAATTGGGTATGTCACGATCACTGGAGGAGTCGCTGGTGCTCAAGC
CACTCCGAATGTCCAATTTAAAGAGGCTGTTTTGGAGTTGCGTGTGACCCCAACGATCACCAATGACAACCGTGTGTTTC
TCAACATGACTGTCAAGAAGGACGAGATCGATCAAATGATTACGATCGCCAATTTCGGTACCGTGCCGACCTTGAACAAG
CGTGAGATCAACACTGCCGTATTGGTTGATGATGGTCAAACTGTTGTTATCGGTGGTGTATATGAGTTTTCCGACCGTAA
TAGTGTGAGTAAGGTTCCGTTCTTAGGGGATGTGCCTTTCCTTGGTAATTTGTTTAAGAAACGTGGTAAAGATAAACAAA
AGGCCGAGCTTTTGATTTTCGTGACTCCTAAGGTGTTGCGTGTGGCTAATGCTACTGCTGCGGTGCATTGA

Domains

Predicted by InterProScan.

Bacterial type II and III secretion system protein (Secretin)

(462-627)

Secretin and TonB N terminus short domain (STN)

(222-268)

Bacterial type II/III secretion system short domain (Secretin_N)

(296-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6R5A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ/pilQ Acinetobacter baylyi ADP1

39.731

93.396

0.371
  pilQ Acinetobacter baumannii strain A118

37.48

96.069

0.36
  pilQ Acinetobacter baumannii D1279779

37.48

96.069

0.36