Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   NWE25_RS16945 Genome accession   NZ_CP102866
Coordinates   3471204..3472367 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain YS-AT-DS1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3466204..3477367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE25_RS16915 (NWE25_16915) - 3466469..3466888 (-) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  NWE25_RS16920 (NWE25_16920) comFC 3466962..3467651 (-) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  NWE25_RS16925 (NWE25_16925) - 3467657..3467941 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NWE25_RS16930 (NWE25_16930) comFA 3467999..3469384 (-) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  NWE25_RS16935 (NWE25_16935) - 3469492..3470340 (-) 849 WP_003151387.1 DegV family protein -
  NWE25_RS16940 (NWE25_16940) degU 3470438..3471127 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NWE25_RS16945 (NWE25_16945) degS 3471204..3472367 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NWE25_RS16950 (NWE25_16950) - 3472590..3473237 (+) 648 WP_007614107.1 YigZ family protein -
  NWE25_RS16955 (NWE25_16955) - 3473242..3474462 (+) 1221 WP_038460047.1 LCP family protein -
  NWE25_RS16960 (NWE25_16960) - 3474561..3475637 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  NWE25_RS16965 (NWE25_16965) - 3475770..3476966 (-) 1197 WP_038460049.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=719451 NWE25_RS16945 WP_007407484.1 3471204..3472367(-) (degS) [Bacillus velezensis strain YS-AT-DS1]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=719451 NWE25_RS16945 WP_007407484.1 3471204..3472367(-) (degS) [Bacillus velezensis strain YS-AT-DS1]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCATGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGCGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATTATTGAAC
GGTCAGAATCATTAGTCAGCCAAATAACCGTCGTTTTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGATGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTACGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACAGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951