Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NWE25_RS16920 Genome accession   NZ_CP102866
Coordinates   3466962..3467651 (-) Length   229 a.a.
NCBI ID   WP_199910472.1    Uniprot ID   -
Organism   Bacillus velezensis strain YS-AT-DS1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3461962..3472651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE25_RS16885 (NWE25_16885) fliW 3462053..3462484 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  NWE25_RS16890 (NWE25_16890) - 3462514..3463083 (-) 570 WP_038460037.1 DUF6470 family protein -
  NWE25_RS16895 (NWE25_16895) flgL 3463174..3464091 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  NWE25_RS16900 (NWE25_16900) flgK 3464103..3465620 (-) 1518 WP_038460039.1 flagellar hook-associated protein FlgK -
  NWE25_RS16905 (NWE25_16905) - 3465636..3466118 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NWE25_RS16910 (NWE25_16910) flgM 3466133..3466399 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NWE25_RS16915 (NWE25_16915) - 3466469..3466888 (-) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  NWE25_RS16920 (NWE25_16920) comFC 3466962..3467651 (-) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  NWE25_RS16925 (NWE25_16925) - 3467657..3467941 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NWE25_RS16930 (NWE25_16930) comFA 3467999..3469384 (-) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  NWE25_RS16935 (NWE25_16935) - 3469492..3470340 (-) 849 WP_003151387.1 DegV family protein -
  NWE25_RS16940 (NWE25_16940) degU 3470438..3471127 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NWE25_RS16945 (NWE25_16945) degS 3471204..3472367 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25255.87 Da        Isoelectric Point: 8.0697

>NTDB_id=719448 NWE25_RS16920 WP_199910472.1 3466962..3467651(-) (comFC) [Bacillus velezensis strain YS-AT-DS1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLYQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=719448 NWE25_RS16920 WP_199910472.1 3466962..3467651(-) (comFC) [Bacillus velezensis strain YS-AT-DS1]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTTTACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598