Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NWE25_RS16940 Genome accession   NZ_CP102866
Coordinates   3470438..3471127 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain YS-AT-DS1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3465438..3476127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE25_RS16905 (NWE25_16905) - 3465636..3466118 (-) 483 WP_003151394.1 flagellar protein FlgN -
  NWE25_RS16910 (NWE25_16910) flgM 3466133..3466399 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NWE25_RS16915 (NWE25_16915) - 3466469..3466888 (-) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  NWE25_RS16920 (NWE25_16920) comFC 3466962..3467651 (-) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  NWE25_RS16925 (NWE25_16925) - 3467657..3467941 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  NWE25_RS16930 (NWE25_16930) comFA 3467999..3469384 (-) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  NWE25_RS16935 (NWE25_16935) - 3469492..3470340 (-) 849 WP_003151387.1 DegV family protein -
  NWE25_RS16940 (NWE25_16940) degU 3470438..3471127 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NWE25_RS16945 (NWE25_16945) degS 3471204..3472367 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NWE25_RS16950 (NWE25_16950) - 3472590..3473237 (+) 648 WP_007614107.1 YigZ family protein -
  NWE25_RS16955 (NWE25_16955) - 3473242..3474462 (+) 1221 WP_038460047.1 LCP family protein -
  NWE25_RS16960 (NWE25_16960) - 3474561..3475637 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=719450 NWE25_RS16940 WP_003219701.1 3470438..3471127(-) (degU) [Bacillus velezensis strain YS-AT-DS1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=719450 NWE25_RS16940 WP_003219701.1 3470438..3471127(-) (degU) [Bacillus velezensis strain YS-AT-DS1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTAGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGTGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1