Detailed information NTG0719143

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NVV93_RS07600
• Genome accession: NZ_CP102830
• Coordinates: 1686714..1688939 (+)
• Length: 741 a.a.
• NCBI ID: WP_258253820.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LS44
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1681714..1693939

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NVV93_RS07570 (NVV93_07570)	-	1681818..1682135 (-)	318	WP_258253814.1	phosphodiesterase	-
NVV93_RS07575 (NVV93_07575)	-	1682157..1682729 (-)	573	WP_258253815.1	PilZ domain-containing protein	-
NVV93_RS07580 (NVV93_07580)	-	1682828..1684072 (+)	1245	WP_258253816.1	lipoprotein-releasing ABC transporter permease subunit	-
NVV93_RS07585 (NVV93_07585)	lolD	1684065..1684748 (+)	684	WP_258253817.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
NVV93_RS07590 (NVV93_07590)	-	1684751..1685995 (+)	1245	WP_258253818.1	lipoprotein-releasing ABC transporter permease subunit	-
NVV93_RS07595 (NVV93_07595)	-	1686029..1686589 (-)	561	WP_258253819.1	DUF2062 domain-containing protein	-
NVV93_RS07600 (NVV93_07600)	comA	1686714..1688939 (+)	2226	WP_258253820.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NVV93_RS07605 (NVV93_07605)	exbB	1689011..1689646 (+)	636	WP_258253821.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NVV93_RS07610 (NVV93_07610)	-	1689643..1690083 (+)	441	WP_258253822.1	biopolymer transporter ExbD	-
NVV93_RS07615 (NVV93_07615)	lpxK	1690083..1691087 (+)	1005	WP_258253823.1	tetraacyldisaccharide 4'-kinase	-
NVV93_RS07620 (NVV93_07620)	-	1691104..1691289 (+)	186	WP_258253824.1	Trm112 family protein	-
NVV93_RS07625 (NVV93_07625)	kdsB	1691286..1692050 (+)	765	WP_258253825.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NVV93_RS07630 (NVV93_07630)	-	1692050..1692514 (+)	465	WP_258253826.1	low molecular weight protein-tyrosine-phosphatase	-
NVV93_RS07635 (NVV93_07635)	murB	1692511..1693530 (+)	1020	WP_258253827.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80693.60 Da
• Isoelectric Point: 9.7486

>NTDB_id=719143 NVV93_RS07600 WP_258253820.1 1686714..1688939(+) (comA) [Pseudomonas sp. LS44]
MRTGMLALAAGLLTLRFLPELPPAWLLGVLPLLGLMLLPFRSYPLAFFLFGFSWACASAQWALDDRLAPELDGNTLWLQG
LVVGLPEQGDGVVRFQLGQPESRRAFLPQRLRLAWYGGPALQAGERWRLAVKLKRGHGMVNPQGFDYEAWLLAQRVGGTG
TVKHGERISPANGPSAWRDALRQRMLKVYAFGRQGGLVALVIGDGSGLSVADWRLLQDTGTVHLMVISGQHVAMLAALVY
ALIVALARLGWWPPSWPWLPWACALSFAVALGYGVLAGFEVPVRRACVMIAMVLIWRLRYRHLGVWLPWLLALNGVLLLE
PLASLQAGFWLSFGAVAVLMLVFAGRLGPWSWWRSWGRAQWTMAIGLLPALLALGLPVSASGPLANLIAVPWVSFLVVPL
ALLGTLLLPLFGLGDGLLWLAGGLLELLFQLLAWIASWLPAWSAPAIPWWAWLLGAAGALLILLPTGMPLRALGLALLLP
MLRPPIDTPAPGRLDAWVLDVGQGLAVALRTQHHALLYDSGPRYGEFDSGERVVLPSLRTLGVDRLDLMLISHADTDHAG
GALSVQRGMSVDRVLSGEPAALAPSLRAELCVDGSTWRWDEVSFTTWRWPSAVEGNPASCVLQIEANGERLLLTGDIDAG
AERALLAAGRDIRADWLLAPHHGSRSSSSMGFLKAVQPQAVLISRGANNTFGHPHPQSLARYQALGIPTYDTVVTGAQRI
QLGANDTLYGLREQRRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=719143 NVV93_RS07600 WP_258253820.1 1686714..1688939(+) (comA) [Pseudomonas sp. LS44]
ATGCGAACAGGGATGTTGGCGTTGGCGGCCGGGCTGCTGACGCTGCGGTTTCTGCCGGAGCTGCCACCCGCCTGGCTGCT
GGGCGTTCTTCCGCTGTTGGGTTTGATGCTGCTGCCGTTTCGCAGCTATCCGTTGGCCTTCTTCCTGTTCGGTTTCAGCT
GGGCCTGCGCCTCGGCGCAATGGGCGCTGGACGATCGTCTGGCGCCTGAACTGGACGGCAATACGCTATGGCTGCAAGGC
CTGGTGGTTGGTCTGCCGGAGCAGGGTGATGGGGTGGTGCGCTTTCAGCTTGGACAGCCCGAGTCGCGGCGCGCCTTTCT
ACCCCAACGCCTACGGCTGGCCTGGTACGGCGGCCCGGCATTGCAAGCGGGTGAGCGCTGGCGGTTGGCGGTCAAGCTCA
AGCGCGGTCATGGCATGGTTAATCCACAGGGCTTCGATTACGAAGCCTGGTTGCTGGCACAGCGGGTTGGCGGCACCGGC
ACCGTCAAACACGGTGAGCGGATCAGCCCAGCCAACGGGCCTTCCGCCTGGCGCGATGCATTGCGTCAGCGGATGCTCAA
GGTTTACGCGTTTGGTCGTCAGGGTGGCTTGGTGGCCTTGGTAATCGGCGACGGCTCGGGATTGTCGGTGGCCGACTGGC
GATTGCTGCAGGACACCGGCACGGTGCACCTGATGGTGATTTCCGGTCAGCATGTGGCGATGCTGGCGGCCCTGGTTTAC
GCCTTGATCGTCGCCCTGGCGCGCCTCGGTTGGTGGCCCCCATCCTGGCCATGGCTGCCGTGGGCCTGCGCGCTATCGTT
CGCCGTGGCGCTCGGCTATGGCGTGCTGGCCGGTTTCGAGGTCCCGGTGCGCCGCGCCTGCGTGATGATCGCCATGGTAC
TGATCTGGCGGCTGCGCTACCGCCATCTTGGCGTCTGGTTGCCCTGGTTGCTGGCGCTTAACGGCGTGCTATTGCTGGAG
CCGCTGGCCAGTCTGCAAGCTGGTTTCTGGCTGTCGTTTGGCGCTGTCGCGGTGTTGATGCTGGTCTTCGCCGGTCGCCT
CGGACCGTGGAGTTGGTGGCGGAGCTGGGGCAGGGCGCAATGGACCATGGCCATCGGTCTGCTGCCGGCGCTGCTGGCTT
TAGGCTTGCCGGTCAGTGCCAGCGGGCCGTTGGCTAACTTGATTGCAGTTCCTTGGGTGAGCTTTCTGGTAGTGCCGTTG
GCGCTGCTCGGCACGCTATTGCTGCCGTTATTCGGGTTGGGCGATGGGCTGTTGTGGCTGGCGGGCGGCCTGTTGGAGTT
GCTTTTTCAACTGCTAGCCTGGATCGCCAGTTGGCTACCGGCCTGGTCGGCGCCGGCTATTCCTTGGTGGGCGTGGCTAT
TGGGTGCTGCAGGCGCACTGCTTATCCTTCTGCCGACGGGCATGCCGTTGCGCGCGCTAGGACTGGCATTGCTTTTGCCG
ATGCTGCGGCCACCGATCGATACTCCCGCGCCAGGACGACTGGACGCCTGGGTATTGGATGTCGGTCAAGGGTTAGCCGT
TGCCTTGCGCACGCAGCACCATGCACTTCTATACGACAGCGGGCCGCGTTATGGCGAATTCGATAGCGGCGAGCGGGTGG
TGCTGCCTTCCCTGCGCACGCTTGGCGTTGATCGTTTGGACCTGATGCTGATTAGCCACGCCGACACCGATCACGCCGGC
GGTGCGCTCAGCGTGCAGCGCGGCATGTCGGTCGATCGGGTGCTCAGTGGTGAGCCCGCGGCGCTGGCACCGTCATTGCG
CGCTGAGCTGTGTGTCGATGGCAGCACCTGGCGGTGGGATGAAGTGAGTTTCACGACCTGGCGTTGGCCGTCGGCTGTCG
AAGGCAATCCGGCCAGTTGCGTGCTGCAAATCGAGGCGAACGGTGAGCGTCTGTTGCTGACCGGTGATATCGATGCCGGC
GCCGAGCGCGCGTTGCTCGCTGCCGGTCGCGACATCCGCGCCGATTGGCTGTTGGCGCCGCATCACGGCAGTCGCAGCTC
GTCCTCAATGGGTTTTCTCAAGGCCGTCCAACCGCAAGCGGTGCTGATTTCCCGTGGCGCCAACAACACCTTCGGTCATC
CGCATCCGCAGAGTCTGGCCCGCTATCAGGCGCTGGGCATCCCGACTTACGACACGGTTGTGACCGGCGCTCAACGTATT
CAGTTGGGGGCTAACGACACCTTGTACGGGTTGCGTGAACAGCGTCGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-465)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.993	96.761	0.629
comA	Ralstonia pseudosolanacearum GMI1000	36.175	100	0.401