Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NVV93_RS07605 Genome accession   NZ_CP102830
Coordinates   1689011..1689646 (+) Length   211 a.a.
NCBI ID   WP_258253821.1    Uniprot ID   -
Organism   Pseudomonas sp. LS44     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1684011..1694646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NVV93_RS07585 (NVV93_07585) lolD 1684065..1684748 (+) 684 WP_258253817.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NVV93_RS07590 (NVV93_07590) - 1684751..1685995 (+) 1245 WP_258253818.1 lipoprotein-releasing ABC transporter permease subunit -
  NVV93_RS07595 (NVV93_07595) - 1686029..1686589 (-) 561 WP_258253819.1 DUF2062 domain-containing protein -
  NVV93_RS07600 (NVV93_07600) comA 1686714..1688939 (+) 2226 WP_258253820.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NVV93_RS07605 (NVV93_07605) exbB 1689011..1689646 (+) 636 WP_258253821.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NVV93_RS07610 (NVV93_07610) - 1689643..1690083 (+) 441 WP_258253822.1 biopolymer transporter ExbD -
  NVV93_RS07615 (NVV93_07615) lpxK 1690083..1691087 (+) 1005 WP_258253823.1 tetraacyldisaccharide 4'-kinase -
  NVV93_RS07620 (NVV93_07620) - 1691104..1691289 (+) 186 WP_258253824.1 Trm112 family protein -
  NVV93_RS07625 (NVV93_07625) kdsB 1691286..1692050 (+) 765 WP_258253825.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NVV93_RS07630 (NVV93_07630) - 1692050..1692514 (+) 465 WP_258253826.1 low molecular weight protein-tyrosine-phosphatase -
  NVV93_RS07635 (NVV93_07635) murB 1692511..1693530 (+) 1020 WP_258253827.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22882.28 Da        Isoelectric Point: 8.5129

>NTDB_id=719144 NVV93_RS07605 WP_258253821.1 1689011..1689646(+) (exbB) [Pseudomonas sp. LS44]
MWELIKAGGWMMLPIILCSIAAMGIIVERLWTLRVSRVSPPQLLGQVWLLIKNKQLNAQKLKEIRQSSPLGEVLAAGLAN
SKHGREIMKECIEEAASRVIHELERYLNALGTIAAMGPLLGLLGTVFGMIDIFSGFMGSGAANAPMLAGGIGKALVTTAA
GLIVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGNREVDFAEVPKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=719144 NVV93_RS07605 WP_258253821.1 1689011..1689646(+) (exbB) [Pseudomonas sp. LS44]
GTGTGGGAACTGATTAAAGCAGGCGGCTGGATGATGCTGCCGATTATTCTCTGTTCTATTGCTGCCATGGGCATCATCGT
CGAGCGCCTGTGGACCTTGCGTGTGAGCAGGGTTTCGCCGCCGCAATTGCTGGGGCAAGTCTGGCTGCTGATCAAGAACA
AGCAGTTGAATGCGCAGAAACTCAAGGAAATCCGCCAGTCCTCGCCGCTGGGTGAGGTGCTGGCGGCAGGCTTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCTAGCCGAGTCATCCATGAGCTGGAACGTTACCT
CAATGCCCTGGGTACCATCGCCGCCATGGGACCATTGCTCGGTCTGCTCGGCACGGTATTCGGCATGATCGATATTTTCA
GTGGCTTCATGGGCAGCGGCGCCGCCAACGCGCCGATGCTCGCCGGCGGTATCGGCAAAGCGTTGGTAACCACCGCCGCG
GGTCTGATCGTGGCGATTCCGGCGGTGTTCTTCCATCGCTATCTGCTGCGCCGGGTCGATGAATTGGTGATCGCCATGGA
ACAGGAGGCGATCAAGCTGGTGGAGGTGGTGCAGGGCAATCGTGAAGTCGATTTTGCCGAGGTGCCCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.159

98.104

0.796