Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NU955_RS03005 Genome accession   NZ_CP102762
Coordinates   643439..643849 (+) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638439..648849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS02990 - 639428..641734 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  NU955_RS02995 - 641779..642552 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  NU955_RS03000 mazG 642664..643470 (+) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  NU955_RS03005 comEA 643439..643849 (+) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  NU955_RS03010 pcnB 643974..645437 (+) 1464 WP_005129648.1 polynucleotide adenylyltransferase PcnB -
  NU955_RS03015 folK 645434..645916 (+) 483 WP_030423643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NU955_RS03020 panB 645962..646771 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  NU955_RS03025 panC 646775..647623 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  NU955_RS03030 rapZ 647646..648497 (+) 852 WP_000821671.1 RNase adapter RapZ -
  NU955_RS03035 - 648494..648763 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=718846 NU955_RS03005 WP_002041921.1 643439..643849(+) (comEA) [Acinetobacter baumannii strain AOR07-BL]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=718846 NU955_RS03005 WP_002041921.1 643439..643849(+) (comEA) [Acinetobacter baumannii strain AOR07-BL]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTCAAAGGAATCGGACCAGCTATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382