Detailed information NTG0071873

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: SA231_RS12355
• Genome accession: NZ_AP024203
• Coordinates: 2492723..2493325 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain SA23-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2487723..2498325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SA231_RS12335 (SA231_23930)	yajC	2489219..2489479 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
SA231_RS12340 (SA231_23940)	tgt	2489498..2490637 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
SA231_RS12345 (SA231_23950)	queA	2490660..2491685 (-)	1026	WP_001019180.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
SA231_RS12350 (SA231_23960)	ruvB	2491687..2492691 (-)	1005	WP_001005764.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SA231_RS12355 (SA231_23970)	ruvA	2492723..2493325 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
SA231_RS12360 (SA231_23980)	-	2493339..2493794 (-)	456	WP_000368902.1	ACT domain-containing protein	-
SA231_RS12365 (SA231_23990)	obgE	2493807..2495099 (-)	1293	WP_000496098.1	GTPase ObgE	-
SA231_RS12370 (SA231_24000)	rpmA	2495456..2495740 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
SA231_RS12375 (SA231_24010)	-	2495752..2496072 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
SA231_RS12380 (SA231_24020)	rplU	2496078..2496386 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
SA231_RS12385 (SA231_24030)	mreD	2496622..2497152 (-)	531	WP_001259927.1	rod shape-determining protein MreD	-
SA231_RS12390 (SA231_24040)	mreC	2497152..2497994 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
SA231_RS12395	-	2498193..2498312 (-)	120	WP_000840600.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=71873 SA231_RS12355 WP_000271547.1 2492723..2493325(-) (ruvA) [Staphylococcus aureus strain SA23-1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=71873 SA231_RS12355 WP_000271547.1 2492723..2493325(-) (ruvA) [Staphylococcus aureus strain SA23-1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425