Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   NWE22_RS03420 Genome accession   NZ_CP102747
Coordinates   658558..659361 (+) Length   267 a.a.
NCBI ID   WP_171988530.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 653558..664361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS03395 (NWE22_03395) - 653991..654689 (-) 699 WP_172036401.1 amino acid ABC transporter permease -
  NWE22_RS03400 (NWE22_03400) - 654704..655543 (-) 840 WP_277745600.1 transporter substrate-binding domain-containing protein -
  NWE22_RS03405 (NWE22_03405) - 655553..656314 (-) 762 WP_277745601.1 amino acid ABC transporter ATP-binding protein -
  NWE22_RS03410 (NWE22_03410) micA 656505..657209 (+) 705 WP_024391260.1 response regulator YycF Regulator
  NWE22_RS03415 (NWE22_03415) micB 657202..658551 (+) 1350 WP_277745602.1 cell wall metabolism sensor histidine kinase VicK Regulator
  NWE22_RS03420 (NWE22_03420) vicX 658558..659361 (+) 804 WP_171988530.1 MBL fold metallo-hydrolase Regulator
  NWE22_RS03425 (NWE22_03425) pbp2b 659640..661712 (+) 2073 WP_171988531.1 penicillin-binding protein PBP2B -
  NWE22_RS03430 (NWE22_03430) recR 661721..662317 (+) 597 WP_002935848.1 recombination mediator RecR -
  NWE22_RS03435 (NWE22_03435) - 662426..663472 (+) 1047 WP_277745603.1 D-alanine--D-alanine ligase -
  NWE22_RS03440 (NWE22_03440) - 663585..663965 (+) 381 WP_171988533.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29624.57 Da        Isoelectric Point: 5.3289

>NTDB_id=718692 NWE22_RS03420 WP_171988530.1 658558..659361(+) (vicX) [Streptococcus parasuis strain SFJ45]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTNKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=718692 NWE22_RS03420 WP_171988530.1 658558..659361(+) (vicX) [Streptococcus parasuis strain SFJ45]
ATGATCGGAACAGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGAAAAAAAATCACTAGTCTTTTGGCAGAAATCGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTTTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCAGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTGGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCATATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCAATAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACGGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.154

100

0.772