Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   NWE22_RS03360 Genome accession   NZ_CP102747
Coordinates   646620..647621 (+) Length   333 a.a.
NCBI ID   WP_239604832.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 641620..652621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS03345 (NWE22_03345) - 642840..643697 (-) 858 WP_171988519.1 DUF975 family protein -
  NWE22_RS03350 (NWE22_03350) tgt 643965..645107 (+) 1143 WP_130554360.1 tRNA guanosine(34) transglycosylase Tgt -
  NWE22_RS03355 (NWE22_03355) - 645329..646414 (-) 1086 WP_171988520.1 Xaa-Pro peptidase family protein -
  NWE22_RS03360 (NWE22_03360) ccpA 646620..647621 (+) 1002 WP_239604832.1 catabolite control protein A Regulator
  NWE22_RS03365 (NWE22_03365) - 647738..648781 (+) 1044 WP_171988521.1 glycosyltransferase family 4 protein -
  NWE22_RS03370 (NWE22_03370) - 648802..650115 (+) 1314 WP_171988522.1 glycosyltransferase family 4 protein -
  NWE22_RS03375 (NWE22_03375) - 650130..650504 (+) 375 WP_171988523.1 hypothetical protein -
  NWE22_RS03380 (NWE22_03380) - 650774..651139 (+) 366 Protein_627 MazG-like protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 36834.86 Da        Isoelectric Point: 5.5299

>NTDB_id=718689 NWE22_RS03360 WP_239604832.1 646620..647621(+) (ccpA) [Streptococcus parasuis strain SFJ45]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVINTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYATASSDAVKLLAKNNKKIAFVSGPLVDDINGKVRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYVLAERVLNAG
ATAAYIAEDEIAAGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=718689 NWE22_RS03360 WP_239604832.1 646620..647621(+) (ccpA) [Streptococcus parasuis strain SFJ45]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAGGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGCCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGCCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTATTAATACATTGTTTTCTAAGCAAGTCGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCAGAATTTTCACGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAACTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAGTTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGTCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATATTGCTGAAGATGAAATCGCTGCCGGTTTGTTAAATGGTATCAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATCGGCGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

100

0.793
  ccpA Streptococcus pneumoniae D39

78.378

100

0.784
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.704

99.399

0.574