Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NWE22_RS02325 Genome accession   NZ_CP102747
Coordinates   439429..439923 (+) Length   164 a.a.
NCBI ID   WP_171989336.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SFJ45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 434429..444923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWE22_RS02300 (NWE22_02300) trpA 435458..436264 (+) 807 WP_171989331.1 tryptophan synthase subunit alpha -
  NWE22_RS02305 (NWE22_02305) - 436671..437519 (+) 849 WP_239604526.1 HAD family hydrolase -
  NWE22_RS02310 (NWE22_02310) - 437583..437912 (+) 330 Protein_413 family 1 glycosylhydrolase -
  NWE22_RS02315 (NWE22_02315) - 437996..438985 (+) 990 WP_171989334.1 lipoate--protein ligase -
  NWE22_RS02320 (NWE22_02320) rpsF 439127..439417 (+) 291 WP_171989335.1 30S ribosomal protein S6 -
  NWE22_RS02325 (NWE22_02325) ssb 439429..439923 (+) 495 WP_171989336.1 single-stranded DNA-binding protein Machinery gene
  NWE22_RS02330 (NWE22_02330) rpsR 439956..440195 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  NWE22_RS02335 (NWE22_02335) - 440753..441409 (-) 657 WP_239604527.1 DUF1129 family protein -
  NWE22_RS02340 (NWE22_02340) - 441425..442369 (-) 945 WP_174846323.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18129.89 Da        Isoelectric Point: 4.7294

>NTDB_id=718685 NWE22_RS02325 WP_171989336.1 439429..439923(+) (ssb) [Streptococcus parasuis strain SFJ45]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=718685 NWE22_RS02325 WP_171989336.1 439429..439923(+) (ssb) [Streptococcus parasuis strain SFJ45]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGGGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGGCAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTATTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGTGGCGGTTATTCAGCTGGCAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366