Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NT239_RS11620 Genome accession   NZ_CP102611
Coordinates   2486449..2487828 (+) Length   459 a.a.
NCBI ID   WP_373974283.1    Uniprot ID   -
Organism   Chitinibacter sp. SCUT-21     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2481449..2492828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT239_RS11595 (NT239_11595) - 2481617..2482351 (+) 735 WP_373974278.1 pteridine reductase -
  NT239_RS11600 (NT239_11600) ttcA 2482458..2483408 (+) 951 WP_373974279.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  NT239_RS11605 (NT239_11605) - 2483408..2484196 (+) 789 WP_373974280.1 fused MFS/spermidine synthase -
  NT239_RS11610 (NT239_11610) - 2484336..2484839 (+) 504 WP_373974281.1 RNA pyrophosphohydrolase -
  NT239_RS11615 (NT239_11615) - 2484882..2486465 (+) 1584 WP_373974282.1 nitrogen regulation protein NR(II) -
  NT239_RS11620 (NT239_11620) pilR 2486449..2487828 (+) 1380 WP_373974283.1 sigma-54-dependent transcriptional regulator Regulator
  NT239_RS11625 (NT239_11625) ampD 2487883..2488473 (+) 591 WP_373974284.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NT239_RS11630 (NT239_11630) - 2488582..2490474 (+) 1893 WP_373974285.1 potassium transporter Kup -
  NT239_RS11635 (NT239_11635) - 2490499..2491116 (-) 618 WP_373974286.1 pyrimidine 5'-nucleotidase -
  NT239_RS11640 (NT239_11640) - 2491185..2491616 (-) 432 WP_373974287.1 CBS domain-containing protein -
  NT239_RS11645 (NT239_11645) argB 2491727..2492605 (-) 879 WP_373974288.1 acetylglutamate kinase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50576.33 Da        Isoelectric Point: 6.0794

>NTDB_id=718154 NT239_RS11620 WP_373974283.1 2486449..2487828(+) (pilR) [Chitinibacter sp. SCUT-21]
MAKKSKVLPRVLVVDDEPDLADLLELTLLKMGLDVVKANGVSVAKKQLDSQRFDLCLSDMRMPDGEGLELVKHIQAQRLD
VPIAIFTAYGSTDNAIAALKAGAFDYLAKPVSLEQLRTLVKSALKLEPVEAAVQQAVSPDNPLLGSSPALLHVLGLVDKL
ARNLAPVYITGESGSGKERAARLIHAKSARADKPFIAVNCGAIPENLMESEFFGYRKGAFTGANEDRDGFFQAAHGGTLF
LDEVADLPLAMQVKLLRVIQERKVRQVGGVIETDIDVRIISATHQNLAKCVEIGKFRQDLYYRLNVIELKMPPLREMGED
VLLIAQAVLKKIAQRHHLDAPTLMPDALQALRRYDFPGNVRELENLLERALALSDGAHIYAEDLHIQQDSADRAEAQAAN
LGDTYPLQDYLDRVEKAAILAALDKTNFNRTQAAKLLGITFRSMRYRLDRLGICQEGDE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=718154 NT239_RS11620 WP_373974283.1 2486449..2487828(+) (pilR) [Chitinibacter sp. SCUT-21]
ATGGCCAAAAAATCTAAAGTTCTACCGCGCGTGCTCGTCGTCGATGATGAGCCCGATCTGGCTGATTTACTCGAGCTGAC
CTTATTAAAGATGGGCTTGGATGTGGTCAAAGCGAATGGCGTTAGTGTCGCTAAAAAACAGCTCGATTCACAGCGATTTG
ATCTGTGCTTAAGTGATATGCGCATGCCGGATGGCGAAGGGCTTGAGTTGGTCAAGCATATCCAAGCTCAGCGTTTAGAC
GTGCCGATTGCGATTTTTACCGCCTATGGTAGTACCGATAATGCGATTGCCGCGTTGAAAGCGGGCGCTTTTGACTATTT
GGCCAAACCTGTTTCGCTGGAGCAACTACGCACCTTGGTTAAATCGGCACTCAAGTTGGAGCCGGTCGAAGCCGCGGTGC
AGCAAGCTGTTTCGCCCGACAACCCATTGTTGGGCTCGTCACCCGCGCTGCTGCACGTGCTGGGCTTGGTCGATAAATTG
GCGCGTAATTTGGCACCCGTGTATATCACTGGTGAATCAGGCTCGGGTAAAGAGCGGGCCGCACGTTTGATTCACGCTAA
ATCAGCTCGGGCGGATAAACCGTTTATTGCGGTGAACTGTGGCGCAATTCCTGAAAACCTGATGGAAAGTGAATTTTTTG
GTTATCGCAAAGGCGCATTTACCGGTGCCAATGAAGACCGCGATGGTTTTTTTCAGGCAGCGCATGGCGGAACCTTGTTT
TTAGATGAAGTCGCCGATTTACCCTTGGCGATGCAGGTGAAATTGCTGCGCGTGATTCAAGAGCGCAAAGTACGCCAAGT
CGGTGGCGTGATCGAAACTGATATTGATGTGCGTATTATTTCGGCCACGCACCAAAATCTGGCGAAATGCGTCGAGATCG
GCAAGTTTAGGCAAGATTTGTATTATCGGCTGAATGTGATCGAGCTCAAAATGCCGCCGTTGCGGGAAATGGGCGAAGAT
GTATTGCTGATTGCGCAGGCGGTGCTGAAGAAAATCGCGCAACGACATCATCTCGATGCGCCGACCCTGATGCCCGATGC
TTTGCAGGCGCTGCGCCGTTATGATTTTCCGGGCAATGTGCGTGAGCTAGAAAATCTGCTGGAACGTGCATTAGCGCTGT
CCGATGGCGCGCATATTTATGCCGAAGATTTGCATATTCAGCAAGATAGCGCCGATCGCGCTGAAGCGCAGGCGGCCAAT
TTAGGTGACACTTATCCATTGCAGGATTACCTCGATCGCGTGGAAAAAGCGGCAATTTTGGCGGCGCTGGATAAAACCAA
TTTTAATCGCACCCAAGCTGCAAAACTGCTAGGCATCACGTTCCGTAGCATGCGTTATCGGCTTGATCGCCTTGGAATTT
GCCAAGAAGGCGATGAATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(411-450)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)

Response regulator receiver domain (Response_reg)

(11-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.757

96.732

0.549
  pilR Acinetobacter baumannii strain A118

47.21

100

0.479
  luxO Vibrio cholerae strain A1552

37.946

97.603

0.37