Detailed information NTG0718116

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: KQ693_RS06475
• Genome accession: NZ_CP102606
• Coordinates: 1141678..1142898 (+)
• Length: 406 a.a.
• NCBI ID: WP_219759417.1
• Uniprot ID: -
• Organism: Thermus sp. PS18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1136678..1147898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ693_RS06455 (KQ693_06455)	-	1138895..1139509 (-)	615	WP_219759463.1	GNAT family N-acetyltransferase	-
KQ693_RS06460 (KQ693_06460)	-	1139546..1140625 (+)	1080	WP_267262306.1	PIG-L deacetylase family protein	-
KQ693_RS06465 (KQ693_06465)	scpB	1140572..1141093 (-)	522	WP_219759415.1	SMC-Scp complex subunit ScpB	-
KQ693_RS06470 (KQ693_06470)	-	1141086..1141679 (-)	594	WP_267262307.1	L-threonylcarbamoyladenylate synthase	-
KQ693_RS06475 (KQ693_06475)	pilC	1141678..1142898 (+)	1221	WP_219759417.1	type II secretion system F family protein	Machinery gene
KQ693_RS06480 (KQ693_06480)	-	1142873..1143325 (-)	453	WP_267262308.1	EVE domain-containing protein	-
KQ693_RS06485 (KQ693_06485)	-	1143396..1143878 (+)	483	WP_267262309.1	hypothetical protein	-
KQ693_RS06490 (KQ693_06490)	-	1143888..1145255 (+)	1368	WP_267262310.1	FAD-binding oxidoreductase	-
KQ693_RS06495 (KQ693_06495)	-	1145306..1146241 (+)	936	WP_267262311.1	sensor domain-containing diguanylate cyclase	-
KQ693_RS06500 (KQ693_06500)	-	1146238..1147317 (-)	1080	WP_267262312.1	prephenate dehydrogenase/arogenate dehydrogenase family protein	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44849.88 Da
• Isoelectric Point: 10.0439

>NTDB_id=718116 KQ693_RS06475 WP_219759417.1 1141678..1142898(+) (pilC) [Thermus sp. PS18]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGRGLQAEVRLPALERGPGLKDLAIFSRQLATMLGA
GLTLLQSLSILERQTENKKFREIIKKVRTDIEGGMAFSDALAKHKLFSRLYVNLVRAGETSGGLDVILDRLATFLEKDLE
LRGKIRSAMTYPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIALSNFLRAATLPLVLLAVVLFFVYRWY
YRTPQGRRVVDRIKLRVPVFGNLNRKTAVARFSRTLALLLSSGVNIVESLDITKGTAGNSVVEEIVDTAKLKVQQGEPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSAQ

Nucleotide

• Length: 1221 bp

>NTDB_id=718116 KQ693_RS06475 WP_219759417.1 1141678..1142898(+) (pilC) [Thermus sp. PS18]
ATGCCAGTCTACCAGTATAAGGCCCGCGACCGCCAGGGCCGCCTGGTGGAGGCCACCATCGAGGCGGAGGACCTGCGCAC
CGCCGCCAGGCTCCTGAGGGACCGGGGGCTTTTCGTGGCCGAGATCAAGGAGCCGGGGAGGGGCCTCCAGGCCGAGGTGC
GCCTTCCTGCCCTGGAGAGGGGTCCTGGCCTGAAGGACCTGGCCATCTTCTCCCGGCAGCTGGCCACCATGCTGGGGGCG
GGGCTCACGCTTTTGCAGTCCCTCTCCATCCTGGAAAGGCAGACCGAGAACAAGAAGTTCCGGGAGATCATTAAGAAGGT
CCGCACCGACATCGAAGGGGGCATGGCCTTTTCCGATGCCCTGGCCAAGCACAAGCTCTTCTCCCGGCTTTACGTGAACC
TGGTGCGGGCCGGGGAGACCTCGGGCGGGCTGGACGTGATCCTGGACCGCCTGGCCACCTTCCTGGAGAAGGACCTGGAG
CTCAGGGGCAAGATCCGTAGCGCCATGACCTATCCCGTGATCGTCTTCGTCTTCGCCGTGGGCGTGGCCTACTTTCTTCT
CACGGGCATCGTGCCCCAGTTCGCCCAGATCCTCACGGACCTCGGCTCGGAGCTCCCCCTCCTCACCCGGTTCCTCATCG
CCCTTTCCAACTTCCTGCGGGCAGCCACGTTGCCCCTCGTGCTTTTGGCGGTGGTCCTCTTCTTCGTCTACCGCTGGTAC
TACCGTACCCCCCAGGGGCGGAGGGTGGTGGACCGGATCAAGCTCCGCGTCCCCGTCTTCGGCAACCTCAACCGCAAGAC
CGCCGTGGCCCGCTTCTCCCGGACCCTGGCCCTCCTCCTTTCCAGCGGGGTGAACATCGTGGAGTCCCTGGACATCACCA
AGGGGACGGCGGGCAACAGCGTGGTGGAGGAGATCGTGGACACGGCCAAGCTCAAGGTCCAGCAAGGGGAGCCTTTAAAC
CTCACCCTGGCCCAGCATCCCTTCGTCTTCCCCCCCATGGTGAGCTCCATGGTGGCCATCGGGGAGGAGACGGGAGCCCT
GGACACCCTTCTTTCCAAAATCGCCGACTTCTACGAGCGGGAGGTGGACGAGGCGGTGGCCAGCCTCACCGCCGCCATCG
AGCCCCTCATGATCATCTTCCTGGGCGTGATCGTGGGCATGATCGTGGCGGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGCACCCTTTCCGCGCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (272-395)

• Type II secretion system (T2SS), protein F (T2SSF) (70-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	92.118	100	0.921
pilC	Pseudomonas stutzeri DSM 10701	37.221	99.261	0.369
pilC	Acinetobacter baylyi ADP1	36.973	99.261	0.367