Detailed information NTG0717977

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NUG20_RS16160
• Genome accession: NZ_CP102592
• Coordinates: 3870990..3872378 (+)
• Length: 462 a.a.
• NCBI ID: WP_263395449.1
• Uniprot ID: -
• Organism: Xanthomonas sp. CFBP 8443
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3865990..3877378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NUG20_RS16145 (NUG20_16150)	sucD	3866962..3867834 (-)	873	WP_263395447.1	succinate--CoA ligase subunit alpha	-
NUG20_RS16150 (NUG20_16155)	sucC	3867858..3869021 (-)	1164	WP_145702360.1	ADP-forming succinate--CoA ligase subunit beta	-
NUG20_RS16155 (NUG20_16160)	-	3869303..3870916 (+)	1614	WP_263395448.1	ATP-binding protein	-
NUG20_RS16160 (NUG20_16165)	pilR	3870990..3872378 (+)	1389	WP_263395449.1	sigma-54 dependent transcriptional regulator	Regulator
NUG20_RS16165 (NUG20_16170)	pilB	3872547..3874283 (-)	1737	WP_263395450.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NUG20_RS16170 (NUG20_16175)	-	3874435..3875292 (+)	858	WP_263395451.1	glycosyltransferase family 2 protein	-
NUG20_RS16175 (NUG20_16180)	-	3875316..3876518 (+)	1203	WP_263395452.1	glycosyltransferase	-

Sequence

Protein

• Length: 462 a.a.
• Molecular weight: 49800.24 Da
• Isoelectric Point: 6.5121

>NTDB_id=717977 NUG20_RS16160 WP_263395449.1 3870990..3872378(+) (pilR) [Xanthomonas sp. CFBP 8443]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIHVLRGLVKHALELNNTERAAPPAPPPEQASRLLGASTAMDALRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAQGGTLFLD
EVAELPLPMQVKLLRAIQEKSVRPVGAATEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAILARLAKGHGRITPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1389 bp

>NTDB_id=717977 NUG20_RS16160 WP_263395449.1 3870990..3872378(+) (pilR) [Xanthomonas sp. CFBP 8443]
ATGAACGAAACCCGAAGCGCCCTTGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTACTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCGCCACTATCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTAGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACACCGAGCGCGCCGCGCCGCCGGCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCGACCGCGATGGACGCGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAACAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGTGCCCACGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCAGGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAGTCGGTGCGCCCGGTCGGCGC
CGCCACCGAGGTGCCGACCGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGCGGCGACCTGCCG
CAACTGGCTGCGGCGATCCTGGCACGGCTGGCCAAGGGCCATGGCCGGATCACCCCGCTGCTGTCGCCATCGGCGCTGGA
CGCCCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAGG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCCCCCGCC
CTGCCGCCCGGCGTGGTCGATATCGACCCGACCTCCTCCGCCCTGCCCTCCTACATCGAGCAGCTCGAACGCGCCGCGAT
CCAGAAGGCGCTGGAGGAAAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGCGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-114)

• Bacterial regulatory protein, Fis family (HTH_8) (419-459)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.527	99.351	0.621
pilR	Acinetobacter baumannii strain A118	46.581	100	0.472