Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   NQZ71_RS08495 Genome accession   NZ_CP102589
Coordinates   1736280..1736582 (+) Length   100 a.a.
NCBI ID   WP_317011669.1    Uniprot ID   -
Organism   Niallia taxi strain NBC_Nia     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1731280..1741582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ71_RS08455 (NQZ71_08475) - 1731564..1731878 (+) 315 WP_127737462.1 MTH1187 family thiamine-binding protein -
  NQZ71_RS08460 (NQZ71_08480) - 1731901..1732539 (+) 639 WP_311200959.1 MBL fold metallo-hydrolase -
  NQZ71_RS08465 (NQZ71_08485) - 1732585..1733304 (-) 720 WP_144452649.1 metalloregulator ArsR/SmtB family transcription factor -
  NQZ71_RS08475 (NQZ71_08495) - 1733651..1733746 (-) 96 WP_127737464.1 YjcZ family sporulation protein -
  NQZ71_RS08480 (NQZ71_08500) - 1733886..1734020 (-) 135 WP_260055392.1 hypothetical protein -
  NQZ71_RS08485 (NQZ71_08505) comGA 1734180..1735241 (+) 1062 WP_144453374.1 competence type IV pilus ATPase ComGA Machinery gene
  NQZ71_RS08490 (NQZ71_08510) comGB 1735216..1736268 (+) 1053 WP_144452650.1 competence type IV pilus assembly protein ComGB -
  NQZ71_RS08495 (NQZ71_08515) comGC 1736280..1736582 (+) 303 WP_317011669.1 competence type IV pilus major pilin ComGC Machinery gene
  NQZ71_RS08500 (NQZ71_08520) comGD 1736579..1737025 (+) 447 WP_260055391.1 competence type IV pilus minor pilin ComGD -
  NQZ71_RS08505 (NQZ71_08525) - 1737009..1737326 (+) 318 WP_144452653.1 hypothetical protein -
  NQZ71_RS08510 (NQZ71_08530) comGF 1737280..1737762 (+) 483 WP_260055390.1 competence type IV pilus minor pilin ComGF -
  NQZ71_RS08515 (NQZ71_08535) comGG 1737759..1738136 (+) 378 WP_317011670.1 competence type IV pilus minor pilin ComGG -
  NQZ71_RS08520 (NQZ71_08540) - 1738196..1738375 (+) 180 WP_144452656.1 YqzE family protein -
  NQZ71_RS08525 (NQZ71_08545) - 1738415..1739212 (-) 798 WP_127737472.1 YqhG family protein -
  NQZ71_RS08530 (NQZ71_08550) - 1739181..1740890 (-) 1710 WP_127737473.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11079.66 Da        Isoelectric Point: 4.2694

>NTDB_id=717936 NQZ71_RS08495 WP_317011669.1 1736280..1736582(+) (comGC) [Niallia taxi strain NBC_Nia]
MRNEKGFTLIEMMIVLLIISVLLIVTLPNITKHNSKINSTGCEAFIKMVEAEVQAYYMDNSSYPDSTEDLVAEGYLKEGQ
TTCSNGKELSINNGSVDVQQ

Nucleotide


Download         Length: 303 bp        

>NTDB_id=717936 NQZ71_RS08495 WP_317011669.1 1736280..1736582(+) (comGC) [Niallia taxi strain NBC_Nia]
ATGAGAAACGAAAAAGGCTTTACTTTAATAGAAATGATGATCGTTTTGTTAATTATATCCGTTTTATTAATTGTAACATT
ACCAAATATCACAAAGCATAATTCAAAAATCAATTCGACAGGCTGTGAGGCGTTTATCAAGATGGTGGAAGCAGAGGTTC
AAGCCTATTATATGGACAACAGCAGCTATCCTGACTCTACGGAGGATTTAGTTGCAGAAGGCTACTTAAAAGAAGGTCAG
ACGACTTGTTCTAATGGGAAGGAGTTATCGATTAATAATGGCTCGGTAGATGTGCAGCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

48.98

98

0.48
  comGC Staphylococcus aureus MW2

48.936

94

0.46
  comGC Staphylococcus aureus N315

48.936

94

0.46
  comGC/cglC Streptococcus mitis SK321

39.785

93

0.37