Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NUU08_RS10175 Genome accession   NZ_CP102522
Coordinates   2010794..2011345 (-) Length   183 a.a.
NCBI ID   WP_058221563.1    Uniprot ID   -
Organism   Lactococcus lactis strain R-707-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2005794..2016345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU08_RS10110 (NUU08_10100) - 2005839..2005961 (-) 123 WP_014570740.1 hypothetical protein -
  NUU08_RS10115 (NUU08_10105) - 2005962..2006138 (-) 177 WP_043991165.1 DUF1660 domain-containing protein -
  NUU08_RS10120 (NUU08_10110) - 2006135..2006353 (-) 219 WP_011834792.1 hypothetical protein -
  NUU08_RS10125 (NUU08_10115) - 2006400..2006645 (-) 246 WP_058221649.1 hypothetical protein -
  NUU08_RS10130 (NUU08_10120) - 2006667..2006816 (-) 150 WP_153927798.1 hypothetical protein -
  NUU08_RS10135 (NUU08_10125) - 2006813..2007487 (-) 675 WP_082225253.1 DUF1642 domain-containing protein -
  NUU08_RS10140 (NUU08_10130) - 2007480..2007686 (-) 207 WP_011676933.1 DUF1125 domain-containing protein -
  NUU08_RS10145 (NUU08_10135) - 2007700..2008224 (-) 525 WP_011834787.1 hypothetical protein -
  NUU08_RS10150 (NUU08_10140) - 2008333..2008572 (-) 240 WP_014570744.1 DUF1031 family protein -
  NUU08_RS10155 (NUU08_10145) - 2008565..2008759 (-) 195 WP_014570745.1 hypothetical protein -
  NUU08_RS10160 (NUU08_10150) - 2008762..2009151 (-) 390 WP_082225254.1 RusA family crossover junction endodeoxyribonuclease -
  NUU08_RS10165 (NUU08_10155) - 2009148..2009873 (-) 726 WP_058221565.1 hypothetical protein -
  NUU08_RS10170 (NUU08_10160) - 2009873..2010661 (-) 789 WP_058221564.1 phage replisome organiser protein -
  NUU08_RS10175 (NUU08_10165) ssb 2010794..2011345 (-) 552 WP_058221563.1 single-stranded DNA-binding protein Machinery gene
  NUU08_RS10180 (NUU08_10170) - 2011359..2011850 (-) 492 WP_050499054.1 ERF family protein -
  NUU08_RS10185 (NUU08_10175) - 2011859..2012248 (-) 390 WP_058221562.1 hypothetical protein -
  NUU08_RS10190 (NUU08_10180) - 2012250..2012582 (-) 333 WP_032398920.1 helix-turn-helix domain-containing protein -
  NUU08_RS10195 (NUU08_10185) - 2012579..2012815 (-) 237 WP_050499055.1 helix-turn-helix transcriptional regulator -
  NUU08_RS10200 (NUU08_10190) - 2012915..2013151 (-) 237 WP_032398921.1 DUF1408 domain-containing protein -
  NUU08_RS10205 (NUU08_10195) - 2013254..2013604 (+) 351 WP_032398922.1 hypothetical protein -
  NUU08_RS10210 (NUU08_10200) - 2013756..2013989 (-) 234 WP_011834776.1 hypothetical protein -
  NUU08_RS10215 (NUU08_10205) - 2014083..2014352 (-) 270 WP_011835841.1 hypothetical protein -
  NUU08_RS10220 (NUU08_10210) - 2014366..2015115 (-) 750 WP_058221874.1 phage antirepressor KilAC domain-containing protein -
  NUU08_RS10225 (NUU08_10215) - 2015127..2015357 (-) 231 WP_042749062.1 helix-turn-helix transcriptional regulator -
  NUU08_RS10230 (NUU08_10220) - 2015462..2015728 (+) 267 WP_015966961.1 hypothetical protein -
  NUU08_RS10235 (NUU08_10225) - 2015722..2015916 (-) 195 WP_032398925.1 hypothetical protein -
  NUU08_RS10240 (NUU08_10230) - 2015956..2016165 (-) 210 WP_023164539.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20998.76 Da        Isoelectric Point: 6.4657

>NTDB_id=717454 NUU08_RS10175 WP_058221563.1 2010794..2011345(-) (ssb) [Lactococcus lactis strain R-707-1]
MINNVVLVGRLTKDVELRYTPQNQATATFSLAVSRSFKNANGERETDFINCVIWRQQAENMANFTHKGSLIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRSQGQQQQQQGNYNQNQNNYQNQGQQNTVQQQHNQGNYQRQPQGNYQNQQQSAQQ
RAQQPDPNFGGAPMEINDEDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=717454 NUU08_RS10175 WP_058221563.1 2010794..2011345(-) (ssb) [Lactococcus lactis strain R-707-1]
ATGATAAATAACGTAGTTTTAGTCGGAAGACTAACTAAAGATGTAGAACTTAGATATACTCCACAAAATCAAGCTACAGC
AACTTTCTCGCTTGCAGTGAGTCGCTCTTTCAAAAATGCCAATGGAGAACGTGAAACAGATTTTATTAACTGTGTTATCT
GGCGACAACAAGCTGAAAATATGGCAAATTTCACACATAAAGGAAGCTTGATTGGTATCACTGGTAGAATCCAAACTCGA
AACTATGAAAATCAACAAGGACAACGTGTTTACGTTACTGAAGTTGTTGCAGATAGTTTCCAACTTCTTGAAAGTAGAAG
CCAAGGTCAACAACAGCAACAACAAGGAAATTACAATCAAAACCAAAATAATTACCAAAATCAGGGTCAACAAAATACTG
TTCAACAGCAACATAACCAAGGTAACTACCAAAGACAACCTCAAGGTAATTATCAAAATCAACAACAATCAGCTCAACAA
AGAGCCCAACAACCTGATCCAAACTTTGGAGGTGCTCCGATGGAAATCAACGATGAAGACCTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

55.851

100

0.574
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.514

100

0.541
  ssb Glaesserella parasuis strain SC1401

34.555

100

0.361