Detailed information NTG0717259

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NQE15_RS22320
• Genome accession: NZ_CP102486
• Coordinates: 4487841..4489193 (-)
• Length: 450 a.a.
• NCBI ID: WP_323054920.1
• Uniprot ID: -
• Organism: Dechloromonas sp. A34
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4482841..4494193

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQE15_RS22305	-	4484233..4486077 (+)	1845	WP_265944917.1	phosphoenolpyruvate carboxykinase (GTP)	-
NQE15_RS22310	-	4486141..4487301 (+)	1161	WP_265944919.1	pyridoxal phosphate-dependent aminotransferase	-
NQE15_RS22315	ampD	4487278..4487841 (-)	564	WP_265944921.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
NQE15_RS22320	pilR	4487841..4489193 (-)	1353	WP_323054920.1	sigma-54 dependent transcriptional regulator	Regulator
NQE15_RS22325	-	4489151..4490758 (-)	1608	WP_265944923.1	sensor histidine kinase	-
NQE15_RS22330	-	4490758..4490988 (-)	231	WP_265944925.1	PP0621 family protein	-
NQE15_RS22335	-	4491163..4491306 (+)	144	Protein_4393	IS5/IS1182 family transposase	-
NQE15_RS22340	-	4491883..4493880 (+)	1998	WP_265944927.1	AAA family ATPase	-

Sequence

Protein

• Length: 450 a.a.
• Molecular weight: 49168.08 Da
• Isoelectric Point: 4.9585

>NTDB_id=717259 NQE15_RS22320 WP_323054920.1 4487841..4489193(-) (pilR) [Dechloromonas sp. A34]
MSVVRTERRPRGELSRILVVDDEADIRELIDLTLARMGLAAECVGSVGAARAALDAGSFQLCLTDMRLPDGEGLDIVRYI
GENHAQTPVAVITAFGSAENAVAALKAGAFDYLAKPVGLEQLRALVKSALRLPEGGQENDDPLQSLIGDSASMQQVRSMI
EKLARSQAPIYISGESGSGKELAAHLIHTRSARSGGPFVPVNCGAIPENLMESEFFGYRKGAFTGADGDRDGFFQAANGG
TLFLDEVADLPLAMQVKLLRAIQEKRVRKVGCVTEEAVDVRIICATHRNLRECVDKGSFRQDLYYRLNVIELRMPPLRER
VEDIAPLVDSILHRLCGAEHPRLSVGAVKAMELYSFPGNVRELENILERATALSSGELIEADDLHLEPEEMAGEAVGRGS
ETLDDYLNRLERQAILEALQKTEGNRTAAARLLGVTFRSMRYRLERLGID

Nucleotide

• Length: 1353 bp

>NTDB_id=717259 NQE15_RS22320 WP_323054920.1 4487841..4489193(-) (pilR) [Dechloromonas sp. A34]
GTGTCTGTTGTCAGAACCGAACGCCGCCCACGCGGTGAACTGAGCCGGATTCTCGTCGTTGACGACGAGGCCGATATCCG
GGAGTTGATTGATCTGACCCTGGCGCGCATGGGCCTGGCCGCCGAATGCGTGGGTTCCGTCGGTGCGGCCCGGGCGGCGC
TGGATGCCGGGAGTTTTCAACTTTGCCTGACCGACATGCGCCTGCCCGACGGCGAGGGGCTCGATATCGTCCGCTATATT
GGCGAGAACCATGCCCAGACCCCGGTTGCCGTGATCACGGCTTTTGGCAGTGCGGAGAATGCCGTTGCCGCATTGAAAGC
CGGCGCTTTCGACTATTTGGCCAAGCCGGTCGGGCTGGAGCAGCTGCGCGCCTTGGTCAAGTCGGCGCTGCGCCTGCCCG
AAGGCGGACAGGAAAACGATGATCCGTTGCAGTCGCTGATCGGCGATTCGGCCAGCATGCAGCAGGTGCGGAGCATGATC
GAGAAGCTCGCCCGCAGCCAGGCGCCGATCTATATCTCCGGCGAATCAGGGAGTGGCAAGGAACTGGCGGCGCACCTGAT
CCATACCCGCAGCGCCCGCAGCGGCGGTCCGTTCGTCCCGGTGAACTGCGGGGCAATTCCGGAAAACCTGATGGAAAGCG
AATTTTTCGGTTACCGAAAGGGCGCTTTCACCGGTGCCGATGGCGATCGCGACGGCTTTTTCCAAGCGGCCAATGGGGGC
ACGCTGTTCCTCGATGAAGTGGCCGATCTGCCGTTGGCCATGCAGGTCAAGCTGTTGCGGGCGATTCAGGAAAAGCGGGT
GCGCAAGGTCGGTTGCGTCACCGAGGAAGCAGTCGATGTGCGGATCATTTGTGCCACCCACCGCAATCTGCGGGAGTGTG
TTGATAAGGGCAGCTTCCGGCAGGACTTGTATTACCGCCTGAACGTCATCGAATTGCGCATGCCACCGCTACGCGAACGC
GTTGAGGATATCGCGCCGCTGGTCGATTCGATCCTGCACCGCCTGTGCGGCGCGGAGCATCCGCGCTTGTCGGTGGGGGC
CGTCAAGGCCATGGAACTGTATTCGTTCCCGGGCAACGTGCGTGAACTGGAAAACATCCTGGAGCGTGCCACGGCCCTGA
GTTCCGGGGAGCTGATCGAGGCTGACGACCTGCATCTGGAGCCGGAAGAAATGGCCGGCGAGGCGGTCGGCCGGGGTAGC
GAAACCCTCGATGACTACCTCAATCGCCTTGAGCGCCAAGCCATCCTGGAGGCCCTGCAGAAGACCGAGGGCAATCGCAC
GGCGGCGGCCCGGCTGCTCGGTGTCACCTTCCGTTCGATGCGCTACCGGCTGGAACGCCTGGGTATCGACTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (17-126)

• Sigma-54 interaction domain (Sigma54_activat) (146-312)

• Bacterial regulatory protein, Fis family (HTH_8) (409-446)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.91	98.667	0.591
pilR	Acinetobacter baumannii strain A118	46.187	100	0.471
luxO	Vibrio cholerae strain A1552	38.288	98.667	0.378