Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NQE15_RS03970 Genome accession   NZ_CP102486
Coordinates   796511..797359 (-) Length   282 a.a.
NCBI ID   WP_265946747.1    Uniprot ID   -
Organism   Dechloromonas sp. A34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 791511..802359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQE15_RS03940 nudB 792486..792938 (-) 453 WP_265946738.1 dihydroneopterin triphosphate diphosphatase -
  NQE15_RS03945 - 792935..793414 (-) 480 WP_265946740.1 barstar family protein -
  NQE15_RS03950 - 793377..793733 (-) 357 WP_265946742.1 ribonuclease domain-containing protein -
  NQE15_RS03955 aspS 793740..795545 (-) 1806 WP_265946744.1 aspartate--tRNA ligase -
  NQE15_RS03960 - 795563..796177 (-) 615 WP_265950120.1 DUF502 domain-containing protein -
  NQE15_RS03965 - 796177..796440 (-) 264 WP_265946745.1 FmdB family zinc ribbon protein -
  NQE15_RS03970 pilD 796511..797359 (-) 849 WP_265946747.1 prepilin peptidase Machinery gene
  NQE15_RS03975 pilC 797359..798585 (-) 1227 WP_265946749.1 type II secretion system F family protein Machinery gene
  NQE15_RS03980 pilB 798601..800314 (-) 1714 Protein_786 type IV-A pilus assembly ATPase PilB -
  NQE15_RS03985 - 800391..801662 (-) 1272 WP_265946751.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 29983.60 Da        Isoelectric Point: 7.9655

>NTDB_id=717244 NQE15_RS03970 WP_265946747.1 796511..797359(-) (pilD) [Dechloromonas sp. A34]
MPLESLGGLAAMAGLLGLCVGSFLNVVIHRLPKMMEQEWHAQCADLRGETVPAAAPLSLARPRSRCPSCGHQITALENIP
VISYLLLKGRCSGCGTSISLRYPLIEIATGLLSAYTAWHFGPSTQAVGALLLVWSLIALAVIDLDTQLLPDAITLPLLWL
GLGFNLFSTYSDLPTAVIGAMAGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWQMLPAIILLSSIVGAAVGIT
LIVTARHGRNVPIPFGPYLAAAGIIALFWGQQITRSYLGLIA

Nucleotide


Download         Length: 849 bp        

>NTDB_id=717244 NQE15_RS03970 WP_265946747.1 796511..797359(-) (pilD) [Dechloromonas sp. A34]
ATGCCTCTTGAATCACTGGGCGGCCTGGCTGCCATGGCTGGGCTGCTCGGTCTATGCGTCGGCAGCTTCCTCAATGTGGT
GATCCATCGCCTGCCGAAGATGATGGAACAGGAATGGCATGCCCAGTGTGCAGACCTGCGGGGCGAAACCGTACCTGCCG
CAGCACCGCTTTCTTTGGCCAGACCACGCTCCCGCTGCCCCTCCTGTGGACACCAGATCACGGCGCTGGAGAACATCCCA
GTCATCAGCTATCTGCTGCTGAAAGGCCGATGCTCAGGTTGTGGCACCTCGATCTCCCTGCGCTACCCACTAATCGAGAT
TGCTACCGGCCTGCTCTCCGCTTATACCGCCTGGCATTTTGGCCCCTCTACGCAAGCCGTTGGCGCACTGCTGCTCGTCT
GGTCACTAATTGCACTTGCAGTCATCGACCTCGACACCCAACTGCTTCCCGACGCCATCACCCTACCCCTGCTCTGGCTC
GGACTGGGGTTCAATCTTTTCTCCACCTACAGCGACCTGCCGACTGCCGTCATCGGTGCCATGGCCGGTTACCTCGCCTT
GTGGTCGGTGTTCTGGCTATTCAAGCTGGCCACCGGCAAGGAAGGCATGGGTTATGGCGACTTCAAGTTGCTGGCGGCAC
TTGGCGCCTGGCTTGGCTGGCAGATGCTGCCAGCCATCATCCTGCTCTCTTCGATCGTTGGCGCGGCAGTTGGCATCACC
CTGATCGTTACCGCCCGTCACGGTCGGAACGTCCCTATTCCCTTTGGCCCCTACCTCGCGGCCGCCGGCATCATCGCCCT
GTTCTGGGGGCAACAGATCACGCGTAGCTATCTTGGCCTGATCGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(15-120)

Type IV leader peptidase family (Peptidase_A24)

(130-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

56.089

96.099

0.539
  pilD Vibrio campbellii strain DS40M4

54.579

96.809

0.528
  pilD Acinetobacter baumannii D1279779

51.971

98.936

0.514
  pilD Acinetobacter nosocomialis M2

51.254

98.936

0.507
  pilD Neisseria gonorrhoeae MS11

47.388

95.035

0.45