Detailed information NTG0717245

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NQE15_RS03975
• Genome accession: NZ_CP102486
• Coordinates: 797359..798585 (-)
• Length: 408 a.a.
• NCBI ID: WP_265946749.1
• Uniprot ID: -
• Organism: Dechloromonas sp. A34
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 792359..803585

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQE15_RS03940	nudB	792486..792938 (-)	453	WP_265946738.1	dihydroneopterin triphosphate diphosphatase	-
NQE15_RS03945	-	792935..793414 (-)	480	WP_265946740.1	barstar family protein	-
NQE15_RS03950	-	793377..793733 (-)	357	WP_265946742.1	ribonuclease domain-containing protein	-
NQE15_RS03955	aspS	793740..795545 (-)	1806	WP_265946744.1	aspartate--tRNA ligase	-
NQE15_RS03960	-	795563..796177 (-)	615	WP_265950120.1	DUF502 domain-containing protein	-
NQE15_RS03965	-	796177..796440 (-)	264	WP_265946745.1	FmdB family zinc ribbon protein	-
NQE15_RS03970	pilD	796511..797359 (-)	849	WP_265946747.1	prepilin peptidase	Machinery gene
NQE15_RS03975	pilC	797359..798585 (-)	1227	WP_265946749.1	type II secretion system F family protein	Machinery gene
NQE15_RS03980	pilB	798601..800314 (-)	1714	Protein_786	type IV-A pilus assembly ATPase PilB	-
NQE15_RS03985	-	800391..801662 (-)	1272	WP_265946751.1	HlyC/CorC family transporter	-
NQE15_RS03990	-	801666..802505 (-)	840	WP_265946753.1	cytochrome C assembly family protein	-

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 44466.32 Da
• Isoelectric Point: 10.0159

>NTDB_id=717245 NQE15_RS03975 WP_265946749.1 797359..798585(-) (pilC) [Dechloromonas sp. A34]
MATAAKSRSSAVKETAFLWEGRNKDGKTVRGELRAASESVVQTTLRRQGITNTKVKKVRFKTGGKITDKDIALFTRQLAT
MMKSGVPLLQAFDIVGRGHSNPAVGKLLLDIKADVETGSSLSQAFRKFPLQFDALYCNLVAAGEQAGILDTLLDRLATYK
EKIIAIKSKIKSALFYPIAVIVVAFVITAVIMIFVIPAFKEVFKSFGADLPAPTLFVMAISDFFVAYWWAIFGAIGGGLY
AFFESWRRSEKVQMFMDRLLLRMPIFGDIIRKSVIARWTRTLATMFAAGVPLVESLDSVGGAAGNHVYKVATKQIQSEVS
TGTSLTISMQNVNLFPNMVTQMVAIGEESGALDSMLSKVADFFEAEVDDAVEAMSSLMEPLIMVVLGTLIGGMVVSMYLP
IFKLGSVV

Nucleotide

• Length: 1227 bp

>NTDB_id=717245 NQE15_RS03975 WP_265946749.1 797359..798585(-) (pilC) [Dechloromonas sp. A34]
ATGGCTACCGCCGCAAAATCGAGGTCATCGGCCGTCAAGGAAACCGCTTTCCTGTGGGAAGGCCGAAACAAGGACGGCAA
GACTGTTCGCGGCGAACTCCGTGCAGCCAGCGAATCTGTAGTCCAAACTACACTGCGCCGCCAAGGCATTACCAATACCA
AAGTCAAGAAAGTTCGCTTCAAGACCGGCGGCAAGATTACCGACAAGGATATCGCCCTCTTTACCCGTCAACTGGCGACC
ATGATGAAGTCCGGCGTGCCGCTGTTGCAGGCCTTCGATATTGTCGGCAGGGGCCACTCCAATCCCGCGGTCGGCAAGTT
GTTGCTCGATATTAAGGCGGATGTCGAAACCGGTAGTTCGCTCTCTCAGGCGTTCCGCAAATTCCCGCTGCAATTCGATG
CACTGTATTGCAACTTGGTAGCCGCCGGCGAACAGGCCGGTATTCTCGACACACTGCTTGACCGTTTGGCCACTTACAAA
GAAAAGATCATTGCCATCAAGAGCAAGATCAAATCGGCCCTGTTCTACCCGATCGCGGTGATCGTCGTCGCCTTCGTAAT
CACCGCGGTGATCATGATCTTCGTGATTCCGGCCTTCAAAGAAGTCTTCAAGAGCTTCGGTGCCGATCTGCCAGCCCCAA
CCCTGTTCGTCATGGCCATCTCTGATTTCTTTGTAGCATATTGGTGGGCGATTTTCGGGGCAATCGGTGGCGGGCTCTAT
GCCTTCTTTGAAAGCTGGCGACGTTCGGAAAAGGTCCAGATGTTCATGGACCGCCTCCTTCTTCGTATGCCGATCTTCGG
CGACATCATTCGCAAATCCGTGATCGCCCGCTGGACACGCACTCTGGCCACCATGTTCGCGGCTGGGGTGCCGCTGGTCG
AGTCCCTCGATTCCGTCGGCGGCGCAGCTGGCAACCACGTCTACAAGGTCGCCACCAAACAGATTCAAAGCGAGGTGTCG
ACTGGCACCAGCCTTACCATCTCGATGCAGAACGTTAATCTCTTCCCTAATATGGTGACCCAGATGGTTGCCATCGGCGA
GGAATCGGGCGCTCTGGACTCCATGCTCTCCAAGGTCGCCGACTTTTTCGAAGCAGAAGTTGATGATGCTGTCGAGGCCA
TGTCGAGCCTGATGGAACCATTGATCATGGTCGTTCTTGGCACGCTTATCGGCGGAATGGTGGTCTCCATGTATCTACCA
ATCTTCAAACTGGGATCTGTTGTTTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (74-197)

• Type II secretion system (T2SS), protein F (T2SSF) (278-400)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.115	98.284	0.532
pilC	Legionella pneumophila strain ERS1305867	54.798	97.059	0.532
pilG	Neisseria gonorrhoeae MS11	53.885	97.794	0.527
pilG	Neisseria meningitidis 44/76-A	53.634	97.794	0.525
pilC	Acinetobacter baumannii D1279779	51.128	97.794	0.5
pilC	Acinetobacter baylyi ADP1	50.378	97.304	0.49
pilC	Vibrio cholerae strain A1552	41.353	97.794	0.404
pilC	Vibrio campbellii strain DS40M4	39.5	98.039	0.387
pilC	Thermus thermophilus HB27	37.108	100	0.377