Detailed information NTG0716967

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NR793_RS11350
• Genome accession: NZ_CP102434
• Coordinates: 625293..626162 (-)
• Length: 289 a.a.
• NCBI ID: WP_005490359.1
• Uniprot ID: Q87LT5
• Organism: Vibrio parahaemolyticus strain RMDVP1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 620293..631162

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NR793_RS11315 (NR793_11340)	rpsP	621261..621509 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
NR793_RS11320 (NR793_11345)	rimM	621538..622086 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
NR793_RS11325 (NR793_11350)	trmD	622114..622857 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NR793_RS11330 (NR793_11355)	rplS	622899..623252 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
NR793_RS11335 (NR793_11360)	yacG	623647..623841 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
NR793_RS11340 (NR793_11365)	zapD	623910..624650 (-)	741	WP_005480890.1	cell division protein ZapD	-
NR793_RS11345 (NR793_11370)	coaE	624678..625292 (-)	615	WP_005480887.1	dephospho-CoA kinase	-
NR793_RS11350 (NR793_11375)	pilD	625293..626162 (-)	870	WP_005490359.1	A24 family peptidase	Machinery gene
NR793_RS11355 (NR793_11380)	pilC	626227..627450 (-)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
NR793_RS11360 (NR793_11385)	pilB	627474..629159 (-)	1686	WP_005479695.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NR793_RS11365 (NR793_11390)	pilA	629169..629588 (-)	420	WP_005479693.1	pilin	Machinery gene
NR793_RS11370 (NR793_11395)	nadC	629851..630738 (-)	888	WP_005479699.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32453.53 Da
• Isoelectric Point: 7.1971

>NTDB_id=716967 NR793_RS11350 WP_005490359.1 625293..626162(-) (pilD) [Vibrio parahaemolyticus strain RMDVP1]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFFLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=716967 NR793_RS11350 WP_005490359.1 625293..626162(-) (pilD) [Vibrio parahaemolyticus strain RMDVP1]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTTTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: Q87LT5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.292	93.772	0.481
pilD	Neisseria gonorrhoeae MS11	47.464	95.502	0.453