Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NRG74_RS21655 Genome accession   NZ_CP102428
Coordinates   4676762..4678102 (-) Length   446 a.a.
NCBI ID   WP_257705286.1    Uniprot ID   -
Organism   Pseudomonas oryzihabitans strain YY7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 4668598..4676761 4676762..4678102 flank 1


Gene organization within MGE regions


Location: 4668598..4678102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG74_RS21620 (NRG74_21620) - 4668598..4672470 (-) 3873 WP_184290405.1 pilus assembly protein -
  NRG74_RS21625 (NRG74_21625) - 4672488..4672958 (-) 471 WP_184290407.1 PilX N-terminal domain-containing pilus assembly protein -
  NRG74_RS21630 (NRG74_21630) - 4672955..4673989 (-) 1035 WP_257705282.1 PilW family protein -
  NRG74_RS21635 (NRG74_21635) pilV 4673986..4674459 (-) 474 WP_184290411.1 type IV pilus modification protein PilV -
  NRG74_RS21640 (NRG74_21640) - 4674456..4674974 (-) 519 WP_257705283.1 GspH/FimT family pseudopilin -
  NRG74_RS21645 (NRG74_21645) - 4675038..4675562 (-) 525 WP_257705284.1 GspH/FimT family pseudopilin -
  NRG74_RS21650 (NRG74_21650) thiO 4675658..4676761 (+) 1104 WP_257705285.1 glycine oxidase ThiO -
  NRG74_RS21655 (NRG74_21655) pilR 4676762..4678102 (-) 1341 WP_257705286.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 48977.20 Da        Isoelectric Point: 5.8417

>NTDB_id=716940 NRG74_RS21655 WP_257705286.1 4676762..4678102(-) (pilR) [Pseudomonas oryzihabitans strain YY7]
MARQKVLIVDDEPDIRELLEITLGRMKLDTASAKNIADARAILERESFDLCLTDMRLPDGSGLDLIQFIQQRLPQLPVAM
ITAFGSLETAVQALKAGAFDYLTKPVDLPRLRELVGTALRLSGSTPATAGASETQLLGESPPMRALRGQIAKLARSQAPV
YISGESGSGKERVARLIHEQGPRAGRPFVPVNCGAIPSELVESEFFGHRKGSFTGAIEDKQGLFQAAQGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRPVGSQQELSLDVRILSATHRDLAAEVAAGTFRQDLYYRLNVIELQVPALRERREDIGVLANH
MLERLARDSGLAPATLGEDALARLKSYRFPGNVRELENMLERAYTLCEGDVIRPADLRLADTPAATATGEASLANIANLE
DHLESIERQLIMQALEETRWNRTAAAERLGLSFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=716940 NRG74_RS21655 WP_257705286.1 4676762..4678102(-) (pilR) [Pseudomonas oryzihabitans strain YY7]
ATGGCCCGACAGAAAGTCCTGATCGTCGACGATGAACCCGATATCCGCGAACTCCTGGAAATCACCCTGGGGCGGATGAA
ACTCGACACCGCCAGCGCCAAGAACATCGCCGACGCCCGGGCCATCCTCGAACGGGAAAGCTTCGACCTCTGCCTGACCG
ACATGCGCCTGCCCGACGGTTCGGGCCTCGACCTCATCCAGTTCATCCAGCAGCGGCTCCCGCAACTGCCGGTGGCCATG
ATCACCGCCTTCGGCAGCCTGGAAACCGCGGTCCAGGCACTCAAGGCCGGCGCCTTCGACTACCTGACCAAGCCGGTGGA
TCTGCCGCGCCTGCGCGAGCTGGTGGGCACCGCCCTGCGCCTGTCCGGGTCCACCCCGGCGACAGCCGGTGCCAGTGAAA
CCCAGCTGCTCGGCGAATCGCCCCCCATGCGCGCCCTGCGCGGCCAGATCGCCAAGCTGGCGCGCAGCCAGGCGCCGGTC
TACATCAGTGGCGAATCGGGCAGCGGCAAGGAGCGCGTAGCGCGCCTGATTCACGAGCAAGGCCCCCGTGCCGGACGGCC
CTTCGTCCCGGTCAACTGTGGCGCCATTCCCTCGGAACTGGTGGAGAGCGAATTCTTCGGCCACCGCAAGGGCAGCTTCA
CCGGCGCCATTGAAGACAAGCAGGGCCTGTTCCAGGCCGCCCAGGGCGGCACCCTGTTCCTCGACGAGGTGGCTGACCTG
CCGCTGCCGATGCAGGTCAAGCTCTTGCGCGCCATCCAGGAAAAGGCCGTGCGCCCGGTAGGCAGCCAGCAGGAGCTCAG
CCTGGACGTGCGCATCCTCAGCGCCACCCACCGGGATCTCGCCGCCGAGGTCGCCGCCGGCACCTTCCGCCAGGATCTCT
ACTATCGCCTCAACGTCATCGAATTGCAGGTACCGGCCCTGCGCGAGCGCCGTGAAGACATCGGCGTCCTGGCCAATCAC
ATGCTCGAACGCCTGGCGCGGGACTCAGGCCTCGCCCCGGCCACGCTGGGCGAAGATGCCCTGGCCAGGCTCAAGAGCTA
CCGCTTTCCCGGCAACGTGCGCGAACTGGAAAACATGCTGGAGCGGGCCTACACCCTTTGCGAAGGCGATGTCATCCGCC
CGGCCGACCTGCGCCTGGCCGACACCCCGGCGGCCACCGCCACCGGCGAAGCCAGCCTGGCCAACATCGCCAACCTCGAA
GACCACCTGGAGTCCATCGAGCGCCAGCTGATCATGCAGGCGCTCGAAGAGACCCGCTGGAACCGCACCGCCGCCGCGGA
ACGCCTGGGTCTATCCTTCCGTTCGATGCGCTACCGCCTGAAAAAGCTCGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(136-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.821

100

0.798
  pilR Acinetobacter baumannii strain A118

48.927

100

0.511
  luxO Vibrio cholerae strain A1552

37.783

99.103

0.374