Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   NRG23_RS23935 Genome accession   NZ_CP102374
Coordinates   5282645..5283517 (-) Length   290 a.a.
NCBI ID   WP_009050909.1    Uniprot ID   A0AB33WWI2
Organism   Pseudomonas sp. T8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5277645..5288517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRG23_RS23905 (NRG23_23905) - 5278494..5279930 (-) 1437 WP_009050914.1 undecaprenyl-phosphate glucose phosphotransferase -
  NRG23_RS23910 (NRG23_23910) - 5280386..5280853 (+) 468 WP_016703672.1 hypothetical protein -
  NRG23_RS23915 (NRG23_23915) - 5280850..5281539 (+) 690 WP_110177023.1 energy-coupling factor ABC transporter permease -
  NRG23_RS23920 (NRG23_23920) - 5281605..5281820 (+) 216 WP_009050911.1 hypothetical protein -
  NRG23_RS23925 (NRG23_23925) yacG 5281825..5282028 (-) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  NRG23_RS23930 (NRG23_23930) coaE 5282025..5282648 (-) 624 WP_009045669.1 dephospho-CoA kinase -
  NRG23_RS23935 (NRG23_23935) pilD 5282645..5283517 (-) 873 WP_009050909.1 A24 family peptidase Machinery gene
  NRG23_RS23940 (NRG23_23940) pilC 5283520..5284737 (-) 1218 WP_257372457.1 type II secretion system F family protein Machinery gene
  NRG23_RS23945 (NRG23_23945) - 5285102..5285518 (+) 417 WP_009050907.1 pilin -
  NRG23_RS23950 (NRG23_23950) - 5285806..5286162 (+) 357 WP_009050906.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32050.22 Da        Isoelectric Point: 7.9954

>NTDB_id=716617 NRG23_RS23935 WP_009050909.1 5282645..5283517(-) (pilD) [Pseudomonas sp. T8]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide


Download         Length: 873 bp        

>NTDB_id=716617 NRG23_RS23935 WP_009050909.1 5282645..5283517(-) (pilD) [Pseudomonas sp. T8]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGCCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCATTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGTTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.817

97.931

0.517
  pilD Vibrio campbellii strain DS40M4

52.65

97.586

0.514
  pilD Acinetobacter baumannii D1279779

50.909

94.828

0.483
  pilD Acinetobacter nosocomialis M2

50.182

94.828

0.476
  pilD Neisseria gonorrhoeae MS11

47.794

93.793

0.448