Detailed information NTG0716403

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: NQ186_RS21955
• Genome accession: NZ_CP102358
• Coordinates: 4946526..4948760 (-)
• Length: 744 a.a.
• NCBI ID: WP_257355891.1
• Uniprot ID: -
• Organism: Pseudomonas zeae strain BIM B-582
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4941526..4953760

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQ186_RS21920 (NQ186_21920)	murB	4941906..4942925 (-)	1020	WP_093435451.1	UDP-N-acetylmuramate dehydrogenase	-
NQ186_RS21925 (NQ186_21925)	-	4942922..4943386 (-)	465	WP_093435454.1	low molecular weight protein-tyrosine-phosphatase	-
NQ186_RS21930 (NQ186_21930)	kdsB	4943386..4944150 (-)	765	WP_093435457.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
NQ186_RS21935 (NQ186_21935)	-	4944147..4944332 (-)	186	WP_003174668.1	Trm112 family protein	-
NQ186_RS21940 (NQ186_21940)	lpxK	4944354..4945364 (-)	1011	WP_257355888.1	tetraacyldisaccharide 4'-kinase	-
NQ186_RS21945 (NQ186_21945)	-	4945364..4945792 (-)	429	WP_257355889.1	biopolymer transporter ExbD	-
NQ186_RS21950 (NQ186_21950)	exbB	4945789..4946424 (-)	636	WP_042560451.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
NQ186_RS21955 (NQ186_21955)	comA	4946526..4948760 (-)	2235	WP_257355891.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
NQ186_RS21960 (NQ186_21960)	-	4948897..4949415 (+)	519	WP_095048627.1	DUF2062 domain-containing protein	-
NQ186_RS21965 (NQ186_21965)	-	4949559..4950338 (-)	780	WP_008087860.1	ABC transporter permease	-
NQ186_RS21970 (NQ186_21970)	-	4950335..4951267 (-)	933	WP_093435472.1	ABC transporter ATP-binding protein	-
NQ186_RS21975 (NQ186_21975)	-	4951401..4952024 (-)	624	WP_257355892.1	glutathione S-transferase family protein	-
NQ186_RS21980 (NQ186_21980)	-	4952068..4952727 (-)	660	WP_257355893.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81297.04 Da
• Isoelectric Point: 9.5447

>NTDB_id=716403 NQ186_RS21955 WP_257355891.1 4946526..4948760(-) (comA) [Pseudomonas zeae strain BIM B-582]
MRTGMMALAAGLLVAVFMPALPPVWLMLLLPVVALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPAGLDGETRWVEG
WVVGLPQSSDGVVRFELADAHSRHEKLPSLMRLAWYAGPPVNSGERWRLAVKLKRPGGLRNPEAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLSVDAQGRNGALAALVLGDGSGLSREDWQTLQDTGTVHLLVISGQHIGLLAALMYGL
VAGMARYGLWPLRWPWLPWACGMGFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAGWPLLLAFNAVLLLDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLAVLPPAL
LGTVLLPVPFVGAGLLWLAGGLIDGLFHALATIAGHWPAWIAPSIPAWVWAIGSLGAGLLLLPRGVPLRPLGWPLLLLLV
VPPRDQIDEGLADIWQLDVGQGLAILIRTRHHALLYDAGPRFGEFDLGERVVLPSLRKLSVEKLDLMLLSHADADHAGGA
LAISRGLTVDQVISGDPAGLPAQLNAEACASGQQWQWDGVRFQLWQWADADDSNQRSCVLQIEANGERLLLTGDIDSHAE
RVLLDGPLAVPTQWLQSPHHGSRSSSSMALLNVLKPESVLISRGHGNSFGHPHPTVLARYRKLGLNIYDSAEQGAIHLQL
GTFRAPRTMRHQRRFWRDPPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=716403 NQ186_RS21955 WP_257355891.1 4946526..4948760(-) (comA) [Pseudomonas zeae strain BIM B-582]
ATGCGCACAGGGATGATGGCGCTCGCAGCCGGTCTGCTGGTCGCGGTTTTTATGCCGGCATTACCGCCGGTCTGGTTGAT
GCTGTTGTTGCCGGTCGTGGCTTTGATGCTGCTGCCGTTTCGCAGCTATCCGCTGGCGTTTTTGCTGTTTGGCTTCACGT
GGGCCAGCGTCGGTGCGCAATGGGCGTTGAATGATCGTTTGCCGGCCGGGCTGGATGGCGAAACCCGGTGGGTTGAAGGG
TGGGTCGTCGGTTTGCCGCAGAGCAGCGACGGCGTGGTGCGCTTCGAATTGGCTGATGCGCACTCGCGTCATGAAAAACT
GCCATCGCTGATGCGGCTTGCCTGGTACGCCGGGCCACCGGTCAACAGCGGCGAGCGTTGGCGTTTGGCGGTCAAGCTCA
AGCGTCCCGGTGGATTGCGCAATCCTGAGGCCTTTGACTACGAAGCCTGGCTGCTGGCGCAACGTATTGGCGCCACCGGC
ACGATCAAGGACGGCCAGCGCTTGAGCGAAGCGCGTTGGGCCTGGCGTGACAGTATTCGCCAGCGTTTGCTGAGTGTGGA
TGCGCAGGGGCGAAACGGCGCATTGGCGGCGTTAGTGCTGGGTGACGGCTCGGGGCTCAGTCGCGAGGACTGGCAGACTC
TGCAGGACACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATCGGTTTGCTGGCGGCGCTGATGTATGGGCTG
GTCGCCGGCATGGCGCGATATGGCCTGTGGCCGCTGCGCTGGCCGTGGCTGCCGTGGGCCTGTGGTATGGGGTTCGCGGC
AGCACTCGGTTATGGCCTGCTTGCCGGGTTCGACGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGACTGGTGCTGTTGT
GGCGCCTGCGCTTTCGTCATCTTGGCGCAGGGTGGCCGTTGTTGCTGGCGTTCAACGCTGTGCTGTTGCTGGACCCGCTC
GCCAGTTTGCGTCCGGGTCTGTGGCTCTCGTTTGCGGCGGTAGCGGTGCTGATCTTTACCTTTGGCGGCCGCTTGGGCGC
GTGGCGCTGGTGGCAGACCTGGACGCGGGCGCAGTGGTTGATCGCGATCGGCTTATGTCCGGTGTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGCTGGCCAATTTGCTTGCGGTGCCTTGGGTCAGTCTTGCGGTGTTACCGCCGGCGCTG
CTTGGAACCGTGTTGCTGCCTGTTCCTTTTGTCGGCGCCGGTCTGCTGTGGCTGGCCGGCGGTTTGATCGATGGGTTGTT
TCACGCGCTGGCGACGATTGCCGGGCATTGGCCGGCGTGGATCGCACCCTCGATACCCGCTTGGGTCTGGGCCATTGGCA
GCCTCGGCGCCGGGTTATTACTGTTGCCGCGCGGCGTGCCGCTGCGTCCACTGGGCTGGCCGTTGTTGTTGCTGCTGGTC
GTGCCGCCACGCGATCAGATAGATGAAGGATTGGCTGATATCTGGCAGCTCGATGTCGGCCAAGGCTTGGCCATCCTGAT
CCGGACCCGCCATCACGCGTTGCTCTACGATGCGGGGCCGCGCTTTGGTGAGTTCGACCTCGGCGAGCGTGTGGTGCTGC
CTTCATTGCGCAAACTGAGCGTGGAAAAACTCGATTTGATGCTGCTCAGCCATGCCGACGCCGATCACGCCGGCGGCGCT
TTGGCGATCAGCCGGGGTTTGACCGTCGATCAGGTAATCAGCGGTGACCCGGCGGGGCTGCCCGCGCAATTGAACGCCGA
AGCCTGTGCAAGTGGCCAGCAATGGCAATGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGACGCTGACGACAGCA
ATCAGCGTTCCTGTGTATTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGTTGACCGGCGACATCGACAGCCATGCCGAG
CGCGTGCTGCTCGACGGTCCACTGGCCGTGCCGACGCAATGGCTGCAATCGCCCCATCATGGCAGCCGCAGTTCATCGTC
AATGGCGCTGCTCAACGTCTTGAAACCCGAGTCCGTGCTGATCTCTCGAGGTCATGGCAACTCATTTGGCCATCCACACC
CGACCGTGCTGGCGCGTTATCGCAAACTGGGCCTGAATATTTACGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCACCTTCAGGGCGCCACGCACGATGCGTCATCAGCGGCGTTTCTGGCGTGATCCGCCCGCACTGGCCCGCTGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.151	96.237	0.598
comA	Ralstonia pseudosolanacearum GMI1000	31.893	100	0.367