Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NQ186_RS21950 Genome accession   NZ_CP102358
Coordinates   4945789..4946424 (-) Length   211 a.a.
NCBI ID   WP_042560451.1    Uniprot ID   -
Organism   Pseudomonas zeae strain BIM B-582     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4940789..4951424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ186_RS21915 (NQ186_21915) - 4941190..4941660 (-) 471 WP_008086294.1 (2Fe-2S)-binding protein -
  NQ186_RS21920 (NQ186_21920) murB 4941906..4942925 (-) 1020 WP_093435451.1 UDP-N-acetylmuramate dehydrogenase -
  NQ186_RS21925 (NQ186_21925) - 4942922..4943386 (-) 465 WP_093435454.1 low molecular weight protein-tyrosine-phosphatase -
  NQ186_RS21930 (NQ186_21930) kdsB 4943386..4944150 (-) 765 WP_093435457.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NQ186_RS21935 (NQ186_21935) - 4944147..4944332 (-) 186 WP_003174668.1 Trm112 family protein -
  NQ186_RS21940 (NQ186_21940) lpxK 4944354..4945364 (-) 1011 WP_257355888.1 tetraacyldisaccharide 4'-kinase -
  NQ186_RS21945 (NQ186_21945) - 4945364..4945792 (-) 429 WP_257355889.1 biopolymer transporter ExbD -
  NQ186_RS21950 (NQ186_21950) exbB 4945789..4946424 (-) 636 WP_042560451.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NQ186_RS21955 (NQ186_21955) comA 4946526..4948760 (-) 2235 WP_257355891.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NQ186_RS21960 (NQ186_21960) - 4948897..4949415 (+) 519 WP_095048627.1 DUF2062 domain-containing protein -
  NQ186_RS21965 (NQ186_21965) - 4949559..4950338 (-) 780 WP_008087860.1 ABC transporter permease -
  NQ186_RS21970 (NQ186_21970) - 4950335..4951267 (-) 933 WP_093435472.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22941.07 Da        Isoelectric Point: 6.8771

>NTDB_id=716402 NQ186_RS21950 WP_042560451.1 4945789..4946424(-) (exbB) [Pseudomonas zeae strain BIM B-582]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=716402 NQ186_RS21950 WP_042560451.1 4945789..4946424(-) (exbB) [Pseudomonas zeae strain BIM B-582]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTTACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAATTCGCCGCTGGGGGAAATCCTCGCGGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCATGAACTCGAGCGCTACAT
CAATGCTCTCGGCACTATCGCAGCCATGGCGCCATTACTGGGTCTGCTTGGCACCGTGCTGGGCATGATCGATATCTTCA
GCGCGTTCACCGGCTCCGGCATGACCACCAATGCCTCGGTGCTGGCAGGCGGTATCTCCAAGGCGCTGATCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAATTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTTGAAGTGGTGCAGGGCGATCGTGACGTCGACCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853