Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NL424_RS14990 Genome accession   NZ_CP117020
Coordinates   3035557..3036147 (-) Length   196 a.a.
NCBI ID   WP_049067448.1    Uniprot ID   -
Organism   Escherichia coli strain MLI106K3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030557..3041147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL424_RS14975 (NL424_014970) uhpT 3031079..3032470 (-) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -
  NL424_RS14980 (NL424_014975) uhpC 3032726..3034045 (-) 1320 WP_000936560.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  NL424_RS14985 (NL424_014980) uhpB 3034055..3035557 (-) 1503 WP_001551898.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  NL424_RS14990 (NL424_014985) letA 3035557..3036147 (-) 591 WP_049067448.1 transcriptional regulator UhpA Regulator
  NL424_RS14995 (NL424_014990) - 3036309..3037778 (-) 1470 WP_001551899.1 hypothetical protein -
  NL424_RS15000 (NL424_014995) - 3038054..3038536 (-) 483 WP_096951643.1 hypothetical protein -
  NL424_RS15005 (NL424_015000) - 3039317..3040014 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  NL424_RS15010 (NL424_015005) ilvN 3040379..3040669 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20919.33 Da        Isoelectric Point: 5.9982

>NTDB_id=716266 NL424_RS14990 WP_049067448.1 3035557..3036147(-) (letA) [Escherichia coli strain MLI106K3]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFSSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=716266 NL424_RS14990 WP_049067448.1 3035557..3036147(-) (letA) [Escherichia coli strain MLI106K3]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTAGTTCGGGGCGCGAGGCGCTGGCGGGGTTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCTGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTGATTGCTGCGGTGCATACGGTTGCCACGGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378