Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NL415_RS14860 Genome accession   NZ_CP117016
Coordinates   2900054..2900644 (-) Length   196 a.a.
NCBI ID   WP_000633667.1    Uniprot ID   -
Organism   Escherichia coli strain MLI121     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2895054..2905644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL415_RS14845 (NL415_014845) uhpT 2895576..2896967 (-) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -
  NL415_RS14850 (NL415_014850) uhpC 2897223..2898542 (-) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  NL415_RS14855 (NL415_014855) uhpB 2898552..2900054 (-) 1503 WP_001469012.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  NL415_RS14860 (NL415_014860) letA 2900054..2900644 (-) 591 WP_000633667.1 transcriptional regulator UhpA Regulator
  NL415_RS14865 (NL415_014865) - 2900806..2902065 (-) 1260 WP_227467295.1 hypothetical protein -
  NL415_RS14870 (NL415_014870) - 2902478..2902960 (-) 483 WP_257865468.1 hypothetical protein -
  NL415_RS14875 (NL415_014875) ilvN 2904035..2904325 (-) 291 WP_001181706.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20870.26 Da        Isoelectric Point: 5.9206

>NTDB_id=716180 NL415_RS14860 WP_000633667.1 2900054..2900644(-) (letA) [Escherichia coli strain MLI121]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELAHRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=716180 NL415_RS14860 WP_000633667.1 2900054..2900644(-) (letA) [Escherichia coli strain MLI121]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACGATTATGCTCTCCGTT
CACGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCGCTAACCAAACGTGAACGCCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCACCGTATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.308

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.308

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378