Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ502_RS01795 Genome accession   NZ_CP102290
Coordinates   376077..377927 (-) Length   616 a.a.
NCBI ID   WP_028528126.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain DSM 19829     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 371077..382927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ502_RS01775 (NQ502_01775) - 371281..373065 (-) 1785 WP_028528130.1 aminopeptidase P family protein -
  NQ502_RS01780 (NQ502_01780) - 373155..373607 (+) 453 WP_028528129.1 YjbQ family protein -
  NQ502_RS01785 (NQ502_01785) - 373614..375203 (-) 1590 WP_028528128.1 putative ABC transporter permease subunit -
  NQ502_RS01790 (NQ502_01790) - 375184..375909 (-) 726 WP_028528127.1 ABC transporter ATP-binding protein -
  NQ502_RS01795 (NQ502_01795) rcrQ 376077..377927 (-) 1851 WP_028528126.1 ABC transporter ATP-binding protein Regulator
  NQ502_RS01800 (NQ502_01800) - 377927..380077 (-) 2151 WP_028528125.1 ABC transporter ATP-binding protein -
  NQ502_RS01805 (NQ502_01805) - 380074..380538 (-) 465 WP_049898077.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ502_RS01810 (NQ502_01810) - 380904..382313 (+) 1410 WP_028528124.1 MFS transporter -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 68470.10 Da        Isoelectric Point: 6.5647

>NTDB_id=715930 NQ502_RS01795 WP_028528126.1 376077..377927(-) (rcrQ) [Ruminococcus gauvreauii strain DSM 19829]
MSETHERPQRPGRMHGPGRGMVPGEKAQDFKGTIRKLLAYMGRYKFALIGVFIFAVGGTAFNIVGPKILGKATTEIFNGL
VGKISGSGGIDFEKIGRILLILIALYLISALLTFIQGFIMTGISQKLCYRFREEISQKINRMPMKYFESRTVGEVLSRIT
NDVDTLGQSLNQSVTQLITSVTMIIGILIMMLSISPLMTVIALVILPVSLGLIAVVVKFSQKYFVAQQKYLGKINGQVEE
VYSGHTIVQAFNKEDEMEHEFDETNDVLFQSAWKSQFLSGMMQPIMNFVGNLGYVAVAVVGAFLTVKNMIEVGDIQSFIQ
YVRSFTQPITQVAQVSNMLQSTAAAAERVFEFLSEEEEDQTVEHPVHLERVKGEVDFNHVRFGYQPDKVIIHDFSCHVEP
GQTVAIVGPTGAGKTTMVKLLMRFYDVNKGNISVDGHDLRSFNRSELRESFGMVLQDTWLFKGTIMENIRYGRLDATDDE
VIAAAKAAHAHHFIQTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNPVMILDEATSSVDTRTEARIQKAMNNLMKG
RTSFVIAHRLSTIKDADVILVMKDGDIIEQGDHETLLAKNGFYAKLYNSQFEAVTA

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=715930 NQ502_RS01795 WP_028528126.1 376077..377927(-) (rcrQ) [Ruminococcus gauvreauii strain DSM 19829]
ATGAGCGAGACACATGAAAGACCCCAGAGACCGGGGCGCATGCATGGACCGGGACGGGGAATGGTTCCGGGAGAGAAGGC
TCAGGACTTTAAGGGAACGATCAGAAAACTGCTGGCTTATATGGGGCGCTACAAATTTGCGCTGATTGGTGTATTCATAT
TTGCAGTCGGCGGAACAGCATTTAATATTGTAGGACCGAAGATCCTTGGAAAGGCTACGACGGAGATCTTCAATGGCCTT
GTCGGAAAGATCTCGGGAAGCGGCGGCATAGACTTTGAAAAGATCGGCAGGATACTGCTGATACTGATTGCGCTGTACCT
GATCAGTGCACTGCTGACATTCATCCAGGGATTTATCATGACCGGGATATCGCAGAAGCTCTGTTACCGGTTCCGGGAAG
AAATTTCTCAGAAGATCAACAGAATGCCGATGAAGTATTTCGAGTCCCGGACTGTCGGAGAAGTCCTCTCAAGGATTACG
AATGATGTTGATACCCTTGGACAGAGTCTGAATCAGAGTGTTACTCAGCTGATTACTTCGGTGACTATGATTATCGGTAT
TCTGATCATGATGCTTTCCATCAGTCCGCTGATGACAGTAATTGCACTTGTGATCCTGCCGGTATCCCTGGGACTGATCG
CAGTCGTGGTCAAGTTTTCACAGAAATACTTTGTAGCGCAGCAGAAATATCTGGGTAAGATCAACGGGCAGGTGGAAGAA
GTCTACAGCGGACATACGATCGTTCAGGCATTCAATAAAGAGGATGAGATGGAGCATGAATTCGATGAGACAAATGATGT
ACTGTTTCAGTCAGCCTGGAAATCGCAGTTCCTGTCCGGCATGATGCAGCCGATCATGAACTTCGTGGGGAATCTCGGAT
ACGTTGCGGTTGCGGTAGTCGGGGCATTTCTCACTGTTAAAAATATGATTGAAGTCGGAGATATTCAGTCATTTATCCAG
TATGTGAGGAGTTTTACGCAGCCGATCACCCAGGTGGCGCAGGTATCCAATATGCTGCAGTCGACTGCTGCAGCCGCGGA
GCGCGTGTTTGAATTCCTCAGCGAGGAGGAAGAGGATCAGACGGTGGAACATCCGGTTCATCTGGAACGTGTAAAGGGTG
AGGTGGATTTCAACCATGTGCGGTTCGGTTATCAGCCTGATAAGGTAATCATCCATGACTTCAGCTGTCATGTGGAACCG
GGGCAGACAGTGGCGATCGTAGGTCCGACGGGCGCGGGAAAGACGACGATGGTAAAACTGCTGATGCGTTTTTATGATGT
CAACAAAGGAAATATAAGTGTTGACGGTCATGACCTGCGCAGCTTCAACAGAAGCGAACTCAGGGAGAGCTTCGGTATGG
TACTGCAGGATACCTGGCTGTTCAAGGGTACTATTATGGAGAATATCCGTTACGGGCGGCTGGATGCTACCGATGATGAA
GTCATAGCAGCAGCAAAAGCAGCACATGCTCATCATTTCATCCAGACACTGCCAGGCGGGTACCAGATGGAACTCAATGA
AGATGCCAGCAATGTGTCGCAGGGCCAGAAACAGCTGCTGACAATTGCGAGAGCTATTCTGGCGGATAATCCGGTCATGA
TACTCGACGAGGCGACCAGCTCGGTTGACACGAGAACAGAAGCGCGCATCCAGAAAGCCATGAACAATCTGATGAAAGGG
CGCACCAGCTTCGTGATCGCACATCGGCTCTCGACGATCAAAGATGCGGACGTCATTTTGGTCATGAAGGACGGTGACAT
TATCGAACAGGGGGATCATGAAACCCTTCTGGCGAAGAACGGATTCTATGCAAAGCTGTATAACTCTCAGTTTGAGGCTG
TAACTGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-328)

ABC transporter (ABC_tran)

(392-540)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.541

94.805

0.489