Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NQ502_RS01970 Genome accession   NZ_CP102290
Coordinates   411333..413168 (-) Length   611 a.a.
NCBI ID   WP_028528096.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain DSM 19829     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 406333..418168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ502_RS01950 (NQ502_01950) - 406760..408238 (-) 1479 WP_028528100.1 amino acid adenylation domain-containing protein -
  NQ502_RS01955 (NQ502_01955) - 408235..408957 (-) 723 WP_028528099.1 alpha/beta hydrolase -
  NQ502_RS01960 (NQ502_01960) - 409005..410309 (-) 1305 WP_044983110.1 MATE family efflux transporter -
  NQ502_RS01965 (NQ502_01965) - 410373..411299 (-) 927 WP_044983109.1 CorA family divalent cation transporter -
  NQ502_RS01970 (NQ502_01970) rcrQ 411333..413168 (-) 1836 WP_028528096.1 ABC transporter ATP-binding protein Regulator
  NQ502_RS01975 (NQ502_01975) rcrP 413158..414924 (-) 1767 WP_028528095.1 ABC transporter ATP-binding protein Regulator
  NQ502_RS01980 (NQ502_01980) - 414975..415163 (-) 189 WP_083963202.1 cysteine-rich KTR domain-containing protein -
  NQ502_RS01985 (NQ502_01985) - 415160..415648 (-) 489 WP_028528094.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ502_RS01990 (NQ502_01990) - 415722..415895 (+) 174 WP_169579914.1 hypothetical protein -
  NQ502_RS01995 (NQ502_01995) - 416004..416183 (-) 180 WP_242830245.1 group II intron maturase-specific domain-containing protein -
  NQ502_RS02000 (NQ502_02000) - 416609..416854 (-) 246 WP_044983125.1 HPr family phosphocarrier protein -
  NQ502_RS02005 (NQ502_02005) - 417032..417661 (+) 630 WP_028528091.1 DNA-3-methyladenine glycosylase -
  NQ502_RS02010 (NQ502_02010) - 417748..417942 (-) 195 WP_327240967.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67650.60 Da        Isoelectric Point: 7.6557

>NTDB_id=715931 NQ502_RS01970 WP_028528096.1 411333..413168(-) (rcrQ) [Ruminococcus gauvreauii strain DSM 19829]
MSSEKYNKSQHAETVETSDFSEMGGTAQKAKNAKRTVRMLFSYSKKYLAGIAVAVIAAMAGTVIALVGPEKLKDLTNLIT
KGIGASIDMPGVVKIGLLLVGLYVISALLNTLQGWIMATVTQRISQKMRTDISQKINRLPMWFYHKNTTGDILSRITNDV
DSLGQNLNNSVTTIVTSLTMLAGSLIMMFLTNWMMTVTAIASVVIGFVFMLLIMSKSQKHFENQHKYLGQINGHIEETYT
GHTVVKAYNGEQQMYEPFKSLNKELKKSSFMAQFLSSLMMPIMTFVDNIGYVAVMVVGAALALNGTISFGVIVAFLAYIR
YFTQPITQIAQQAQGLQIAVAAGERVFEFLDAEEMPEEKEKRIQLPPVTGHVEFKNVKFGYEGTGKTIIHNFSAVAKPGQ
KIAIVGPTGAGKTTLVNLLMRFHEINDGEILIDGVPTSRMTREQVHSLFCMVLQDTWLFEGTIRENIVYNKQDVSDEMLK
QACKAVGLHHFIRTLPNGYDTVINDKVNLSAGQRQQITIARAMIDDAPMLILDEATSSIDTRTELLIQNAMDKLMQGRTS
FVIAHRLSTIKNADVILVLKDGDIIESGSHTELMEKGGFYAELYNSQFEVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=715931 NQ502_RS01970 WP_028528096.1 411333..413168(-) (rcrQ) [Ruminococcus gauvreauii strain DSM 19829]
ATGAGCAGTGAAAAATATAACAAAAGCCAACATGCTGAAACGGTGGAGACCTCTGATTTTTCCGAGATGGGCGGAACCGC
CCAAAAGGCTAAAAATGCGAAAAGAACGGTGAGAATGCTGTTTTCTTACTCAAAAAAATATTTGGCCGGTATCGCCGTAG
CGGTGATTGCCGCCATGGCGGGAACCGTAATTGCCCTTGTAGGCCCTGAAAAGTTAAAAGACCTGACTAATCTGATTACA
AAGGGTATCGGGGCGAGCATCGATATGCCCGGCGTTGTTAAAATAGGCTTGCTTCTGGTTGGGCTCTATGTAATAAGCGC
CCTTTTGAATACCCTCCAGGGCTGGATTATGGCAACGGTTACGCAAAGAATATCCCAAAAAATGCGAACCGACATCAGCC
AAAAAATAAACCGGCTTCCCATGTGGTTTTATCACAAAAATACCACAGGCGATATTTTATCCCGGATTACCAATGATGTG
GATTCTCTCGGACAGAATTTGAATAACAGCGTCACAACGATTGTGACCTCTCTTACCATGCTGGCCGGTTCTTTGATTAT
GATGTTCCTTACAAACTGGATGATGACCGTTACGGCCATCGCCTCGGTTGTCATCGGCTTTGTGTTCATGCTGCTTATTA
TGAGCAAATCGCAAAAGCATTTTGAAAACCAGCATAAGTATCTGGGGCAGATTAACGGGCACATTGAAGAAACCTATACC
GGGCACACGGTCGTAAAAGCCTATAACGGCGAGCAGCAAATGTATGAGCCCTTTAAAAGCCTGAATAAGGAACTGAAAAA
AAGCAGTTTTATGGCGCAGTTTCTTTCCAGCCTGATGATGCCCATTATGACCTTTGTGGATAATATCGGTTATGTGGCCG
TCATGGTTGTGGGTGCTGCCTTGGCGCTGAACGGAACCATCTCCTTCGGGGTAATCGTCGCGTTTTTGGCCTATATCCGC
TATTTTACCCAGCCCATTACCCAAATAGCCCAGCAGGCGCAGGGGCTACAGATAGCGGTTGCCGCAGGGGAACGCGTATT
TGAGTTTTTAGATGCGGAGGAAATGCCGGAGGAAAAAGAGAAGCGGATACAGCTTCCTCCTGTAACCGGTCATGTGGAAT
TCAAAAATGTAAAATTTGGATACGAAGGCACCGGCAAGACCATTATCCATAACTTCTCCGCGGTAGCCAAACCCGGACAA
AAAATTGCCATCGTAGGCCCTACCGGCGCGGGCAAAACGACGCTGGTCAATCTGCTGATGCGCTTTCATGAAATTAATGA
CGGTGAAATTTTGATTGACGGCGTTCCTACAAGCCGGATGACAAGGGAGCAGGTCCATTCCCTCTTCTGTATGGTGCTTC
AGGACACCTGGCTGTTTGAGGGAACGATTCGGGAAAACATCGTTTACAACAAGCAGGATGTATCGGATGAAATGTTGAAG
CAGGCGTGCAAGGCGGTTGGCCTGCACCATTTTATCCGAACGCTCCCCAATGGGTACGATACGGTAATCAATGATAAAGT
CAATCTATCTGCCGGCCAGAGGCAGCAGATCACCATTGCACGAGCCATGATCGACGATGCGCCTATGCTGATCTTAGATG
AGGCCACAAGTTCGATTGATACCAGAACAGAGCTGCTGATTCAAAATGCCATGGACAAGCTGATGCAGGGGCGCACATCG
TTTGTCATTGCACACCGGCTTTCCACGATTAAGAATGCGGATGTGATTCTGGTGCTGAAGGACGGCGATATTATTGAAAG
CGGCAGCCATACGGAGTTGATGGAAAAGGGCGGGTTTTATGCCGAACTTTATAATAGTCAGTTCGAGGTGGCTTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-325)

ABC transporter (ABC_tran)

(390-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.11

95.581

0.517