Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NQ502_RS01975 Genome accession   NZ_CP102290
Coordinates   413158..414924 (-) Length   588 a.a.
NCBI ID   WP_028528095.1    Uniprot ID   -
Organism   Ruminococcus gauvreauii strain DSM 19829     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 408158..419924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQ502_RS01955 (NQ502_01955) - 408235..408957 (-) 723 WP_028528099.1 alpha/beta hydrolase -
  NQ502_RS01960 (NQ502_01960) - 409005..410309 (-) 1305 WP_044983110.1 MATE family efflux transporter -
  NQ502_RS01965 (NQ502_01965) - 410373..411299 (-) 927 WP_044983109.1 CorA family divalent cation transporter -
  NQ502_RS01970 (NQ502_01970) rcrQ 411333..413168 (-) 1836 WP_028528096.1 ABC transporter ATP-binding protein Regulator
  NQ502_RS01975 (NQ502_01975) rcrP 413158..414924 (-) 1767 WP_028528095.1 ABC transporter ATP-binding protein Regulator
  NQ502_RS01980 (NQ502_01980) - 414975..415163 (-) 189 WP_083963202.1 cysteine-rich KTR domain-containing protein -
  NQ502_RS01985 (NQ502_01985) - 415160..415648 (-) 489 WP_028528094.1 MarR family winged helix-turn-helix transcriptional regulator -
  NQ502_RS01990 (NQ502_01990) - 415722..415895 (+) 174 WP_169579914.1 hypothetical protein -
  NQ502_RS01995 (NQ502_01995) - 416004..416183 (-) 180 WP_242830245.1 group II intron maturase-specific domain-containing protein -
  NQ502_RS02000 (NQ502_02000) - 416609..416854 (-) 246 WP_044983125.1 HPr family phosphocarrier protein -
  NQ502_RS02005 (NQ502_02005) - 417032..417661 (+) 630 WP_028528091.1 DNA-3-methyladenine glycosylase -
  NQ502_RS02010 (NQ502_02010) - 417748..417942 (-) 195 WP_327240967.1 helix-turn-helix transcriptional regulator -
  NQ502_RS02015 (NQ502_02015) - 418076..418309 (+) 234 WP_028528090.1 hypothetical protein -
  NQ502_RS02020 (NQ502_02020) - 418534..418944 (-) 411 WP_028528089.1 hypothetical protein -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 64321.81 Da        Isoelectric Point: 5.9494

>NTDB_id=715932 NQ502_RS01975 WP_028528095.1 413158..414924(-) (rcrP) [Ruminococcus gauvreauii strain DSM 19829]
MIKILKNLTVRELMLAALSIGLIVLQVWLELTLPEYMGKITEIIQTSGSGMNEILLAGGRMLLITLGSVVVSIIISGLAV
RIATNLSARLRTNLFQTVQSFTMQEINNFSIPSLITRTTNDITQVQMLIVISLQILIKSPILAVWAIVKIMGKSWQWSMA
AGVAVGALILVSVVMIALAIPKFKKLQQQTDDLSRVSRENLTGIRVVRAYNAEAYQEDKFAKANDAFTRTNLFSNRLMAA
LMPSIELIMNGLTLSVYWIGAVLISGAALMSRLTVFSDMMVFSSYAIQLLMAFMMLAMVLILIPRASVSANRICEVLETD
PAIRDGTIDSLHTAAPGEVEFQHVSFKYPDAEDYVLEDISFRASKGETVAFIGATGCGKSTVINLIPRFYDATEGEVYVD
GVNVKEFKQAALRNKIGYVSQKAILFQGSVASNVSFGSNGAGGVSKEAVVSAISTAQSTDFVEGMEASYESYVAPGGSNL
SGGQKQRLSIARAIAREPEILIFDDSFSALDYKTDRLLRNELRQRAADTTVIIVAQRIGTIKDADRIIVLEEGRIAGAGT
HRELMKTCDVYREIAYSQLSKEELENEQ

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=715932 NQ502_RS01975 WP_028528095.1 413158..414924(-) (rcrP) [Ruminococcus gauvreauii strain DSM 19829]
TTGATTAAAATACTGAAAAACCTGACAGTCAGGGAGTTGATGCTTGCCGCCCTAAGCATTGGACTGATTGTGCTGCAGGT
ATGGCTTGAATTGACCTTACCGGAATACATGGGGAAAATCACGGAAATTATCCAGACATCCGGCAGTGGGATGAATGAAA
TTTTACTCGCCGGCGGCAGAATGCTGCTCATCACATTAGGGAGCGTTGTGGTTTCCATTATCATTTCCGGGCTTGCGGTG
CGCATCGCTACCAATCTTTCTGCCCGGCTGCGGACGAATTTATTTCAAACGGTTCAGTCGTTCACCATGCAGGAAATCAA
CAATTTTTCTATTCCCAGCCTCATTACAAGAACCACAAACGATATTACGCAGGTTCAGATGCTCATTGTGATCAGCCTGC
AAATATTGATTAAATCTCCGATTTTGGCGGTATGGGCCATTGTGAAAATTATGGGAAAAAGCTGGCAGTGGTCCATGGCG
GCCGGTGTTGCCGTAGGGGCGCTGATTCTTGTATCCGTCGTCATGATTGCCCTTGCGATTCCGAAATTCAAAAAGCTCCA
ACAGCAGACCGATGATTTGAGCCGCGTTTCCAGAGAGAACCTGACCGGAATCCGGGTTGTCCGCGCCTATAACGCGGAGG
CGTATCAGGAGGATAAATTTGCAAAGGCCAATGATGCCTTCACCCGCACCAATCTGTTTTCCAACCGCTTAATGGCTGCG
CTGATGCCTTCTATCGAACTGATTATGAATGGCCTGACTTTATCTGTTTACTGGATCGGCGCTGTTTTGATTTCCGGAGC
GGCGCTCATGTCAAGACTTACTGTTTTTTCCGACATGATGGTGTTCTCCTCCTATGCGATTCAACTGCTTATGGCGTTTA
TGATGCTGGCGATGGTTTTGATTCTGATTCCCCGGGCCAGCGTATCCGCAAACCGTATCTGCGAGGTTTTGGAAACAGAT
CCGGCCATCCGGGACGGCACCATTGACAGCCTGCATACGGCTGCGCCCGGCGAGGTGGAGTTTCAGCATGTCAGCTTTAA
ATACCCGGATGCGGAGGATTATGTACTTGAGGACATCAGCTTTCGGGCAAGTAAAGGAGAAACCGTGGCCTTTATCGGAG
CAACCGGCTGCGGTAAAAGCACCGTAATCAATTTGATTCCACGGTTTTACGACGCCACGGAGGGCGAGGTCTATGTGGAT
GGCGTCAATGTCAAGGAATTCAAGCAGGCTGCCTTGCGCAATAAGATTGGATATGTTTCTCAAAAAGCGATTCTTTTTCA
GGGAAGCGTCGCCTCCAATGTGTCCTTTGGCTCAAACGGAGCTGGAGGGGTAAGCAAGGAGGCAGTGGTTTCCGCTATTT
CCACAGCGCAAAGCACAGACTTTGTGGAGGGGATGGAGGCTTCCTATGAAAGCTATGTAGCGCCCGGAGGCTCCAATCTT
TCCGGCGGACAAAAGCAACGGCTCTCCATTGCAAGGGCCATTGCGAGAGAACCGGAAATCCTGATTTTTGACGACAGCTT
TTCCGCCCTTGACTATAAAACCGACAGGCTGCTTCGAAATGAACTGCGGCAGCGGGCGGCTGACACCACCGTCATTATTG
TGGCGCAGCGAATCGGCACCATTAAAGACGCCGACCGAATCATCGTCCTGGAGGAAGGCAGAATTGCCGGGGCGGGCACT
CATCGCGAATTGATGAAAACCTGCGATGTGTACCGGGAAATTGCCTATTCGCAGCTTTCAAAGGAGGAACTGGAAAATGA
GCAGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.662

100

0.495