Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   URS_RS02945 Genome accession   NZ_AP018824
Coordinates   604536..605192 (+) Length   218 a.a.
NCBI ID   WP_126624141.1    Uniprot ID   -
Organism   Acinetobacter ursingii strain M3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599536..610192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  URS_RS02930 (URS_0602) - 600575..601561 (-) 987 WP_104795183.1 putative solute-binding protein -
  URS_RS02935 (URS_0603) - 601632..602465 (-) 834 WP_126624139.1 NAD-dependent epimerase/dehydratase family protein -
  URS_RS02940 (URS_0604) recG 602504..604549 (+) 2046 WP_126624140.1 ATP-dependent DNA helicase RecG -
  URS_RS02945 (URS_0605) comF 604536..605192 (+) 657 WP_126624141.1 ComF family protein Machinery gene
  URS_RS02950 (URS_0606) - 605199..605624 (-) 426 WP_126624142.1 NUDIX domain-containing protein -
  URS_RS02955 (URS_0607) - 605640..606224 (-) 585 WP_010588689.1 TIGR00730 family Rossman fold protein -
  URS_RS02960 (URS_0608) - 606382..607395 (+) 1014 WP_126624143.1 CorA family divalent cation transporter -
  URS_RS02965 (URS_0609) - 607451..607744 (-) 294 WP_004985287.1 lipid asymmetry maintenance protein MlaB -
  URS_RS02970 (URS_0610) - 607758..608390 (-) 633 WP_004985286.1 phospholipid-binding protein MlaC -
  URS_RS02975 (URS_0611) - 608409..609092 (-) 684 WP_004985284.1 outer membrane lipid asymmetry maintenance protein MlaD -
  URS_RS02980 (URS_0612) mlaE 609092..609871 (-) 780 WP_004985283.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 25493.07 Da        Isoelectric Point: 9.6308

>NTDB_id=71561 URS_RS02945 WP_126624141.1 604536..605192(+) (comF) [Acinetobacter ursingii strain M3]
MPMFDNIKASMQQLGQKLLPCRLCESSPRLKHYVLCKSCWQQLPWLKQPIHRHELQIMAVCYYDYPIDRILQQFKYEQKL
HHQPLLDQLIAQMKYPKVQAIVPMPISEARLIERGYNQSLLLAQQLAKKLNLPVWQPIHRLEQHSQKGLNRIERIQGIEQ
QFVLLEKPKIRYRKVLIIDDVVTTGSSIYALHQALQQLGCQQIYACCIAAATNQNAKT

Nucleotide


Download         Length: 657 bp        

>NTDB_id=71561 URS_RS02945 WP_126624141.1 604536..605192(+) (comF) [Acinetobacter ursingii strain M3]
ATGCCTATGTTTGATAATATTAAAGCCTCCATGCAACAGCTTGGACAAAAACTTTTACCCTGCCGTCTGTGTGAATCCAG
TCCACGTTTAAAGCATTATGTTCTATGTAAAAGTTGCTGGCAGCAATTGCCTTGGCTGAAACAACCGATCCATCGGCATG
AATTACAGATCATGGCGGTCTGTTACTATGATTATCCGATCGATCGTATTTTACAGCAGTTTAAATACGAACAAAAATTA
CATCACCAGCCCTTACTCGATCAACTCATTGCCCAGATGAAATATCCTAAAGTGCAGGCGATTGTCCCTATGCCGATCTC
GGAGGCACGTTTGATCGAACGCGGTTATAATCAATCTTTGCTCTTGGCACAACAACTGGCAAAGAAACTCAATCTTCCCG
TCTGGCAACCAATTCATCGACTTGAACAACATTCTCAAAAAGGACTGAATCGAATAGAGCGGATTCAAGGCATAGAACAG
CAGTTTGTGCTGTTAGAGAAACCCAAAATTCGCTACCGAAAAGTTTTGATCATTGATGATGTCGTCACGACTGGCAGCTC
AATTTATGCATTACATCAAGCATTACAACAATTAGGATGCCAGCAGATTTACGCATGTTGTATTGCAGCAGCAACAAATC
AAAACGCCAAAACTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(119-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.725

93.578

0.596
  comF Acinetobacter baumannii D1279779

63.235

93.578

0.592

Multiple sequence alignment