Detailed information NTG0071548

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DLM_RS20270
• Genome accession: NZ_AP018823
• Coordinates: 4309992..4311326 (+)
• Length: 444 a.a.
• NCBI ID: WP_089082509.1
• Uniprot ID: A0A3G9GPX3
• Organism: Aquitalea magnusonii strain H3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4304992..4316326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLM_RS20255 (DLM_4040)	-	4305476..4305946 (-)	471	WP_089082506.1	GNAT family N-acetyltransferase	-
DLM_RS20260 (DLM_4041)	parC	4306116..4308446 (+)	2331	WP_197715616.1	DNA topoisomerase IV subunit A	-
DLM_RS20265 (DLM_4042)	-	4308446..4309999 (+)	1554	WP_089082508.1	two-component system sensor histidine kinase NtrB	-
DLM_RS20270 (DLM_4043)	pilR	4309992..4311326 (+)	1335	WP_089082509.1	sigma-54-dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49142.60 Da
• Isoelectric Point: 5.0859

>NTDB_id=71548 DLM_RS20270 WP_089082509.1 4309992..4311326(+) (pilR) [Aquitalea magnusonii strain H3]
MNKNPLRVLVVDDEPDIRELLELTLIKMGLDVATAANVSDAKALLLREPFNLVLSDMRMPDGEGIEVVEFIAEQGLDIPS
AIITAYGSTENAVKAMKAGAFDYLSKPISLAQLRTLVKSVLKVEGNGKPLSIERLVGDSPAMLEVRRMIDKLARSQAAVY
ISGESGTGKEQAARLIHEQSARAERPFVPVNCGAIPENLMESEFFGYRKGAFTGADSDRDGFFQQATGGTLFLDEVADLP
LAMQVKLLRAIQEKKVRKLGSPQEEPVDARIICATHKDLAALVEAGQFRQDLYYRLNVLPLRMPPLRELRDDIPRFIGAL
LDRFATPENRPRLTPDAVKAMLAYNYPGNFRELENILERAIALAGEDKVDVADLQLTPCQPLDDSDSSPGYAGSEPLQAF
LDRVEREAILKALDATRFNRTQAAKLLGLTFRSMRYRMDRLGIK

Nucleotide

• Length: 1335 bp

>NTDB_id=71548 DLM_RS20270 WP_089082509.1 4309992..4311326(+) (pilR) [Aquitalea magnusonii strain H3]
ATGAATAAAAATCCCCTGCGCGTGCTGGTGGTGGATGACGAGCCGGACATCCGCGAACTGCTCGAACTCACCCTGATCAA
GATGGGCCTGGATGTAGCGACTGCTGCTAATGTCAGCGATGCCAAGGCGCTGCTGCTGCGCGAACCCTTCAATCTGGTCC
TCAGCGATATGCGCATGCCAGATGGAGAAGGCATCGAAGTGGTCGAATTCATTGCCGAACAAGGACTGGACATTCCCAGC
GCCATCATTACCGCCTATGGCAGTACCGAAAACGCCGTCAAGGCCATGAAAGCCGGGGCCTTCGATTACCTGTCCAAACC
CATCAGCCTGGCACAATTACGCACGCTGGTGAAATCAGTATTAAAGGTAGAAGGCAATGGCAAGCCGCTTAGCATAGAGC
GCCTGGTGGGTGACTCCCCCGCCATGCTGGAGGTGCGCCGCATGATAGACAAGCTGGCGCGCAGCCAGGCCGCCGTCTAC
ATCAGTGGCGAATCCGGCACCGGCAAGGAACAGGCCGCTCGTCTGATTCACGAACAAAGTGCGCGCGCCGAACGGCCATT
CGTGCCGGTCAATTGTGGAGCCATTCCGGAAAACCTGATGGAAAGTGAGTTCTTCGGTTACCGCAAAGGCGCATTCACCG
GAGCAGACAGTGATCGCGACGGTTTTTTCCAGCAAGCTACCGGAGGCACGCTGTTTCTGGATGAAGTGGCCGATCTGCCG
CTGGCCATGCAGGTCAAGCTGCTGCGTGCCATCCAGGAAAAGAAAGTGCGCAAGCTAGGCAGTCCGCAGGAGGAACCGGT
CGATGCCCGCATCATCTGTGCCACCCATAAAGATCTGGCCGCGCTGGTCGAAGCCGGCCAGTTCCGCCAGGACCTTTACT
ACCGGCTCAATGTCCTGCCATTGCGCATGCCGCCGCTGCGCGAGCTGCGCGACGACATCCCGCGCTTCATCGGTGCCCTG
CTGGACCGTTTCGCCACCCCGGAAAACCGCCCGCGCCTCACGCCGGATGCCGTCAAGGCCATGCTTGCCTATAACTACCC
GGGTAATTTCCGCGAACTGGAAAACATTCTTGAGCGCGCCATTGCACTGGCAGGAGAAGACAAGGTTGATGTTGCCGACT
TGCAGCTCACACCCTGCCAGCCGCTGGACGATTCCGATAGCAGCCCCGGCTATGCTGGGAGTGAACCGCTGCAAGCGTTC
CTCGACCGGGTAGAGCGGGAAGCCATTCTCAAAGCACTGGATGCCACCCGCTTCAACCGCACCCAGGCAGCCAAGCTATT
GGGCCTCACCTTTCGTTCCATGCGCTACCGCATGGATAGGCTGGGCATCAAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (401-440)

• Response regulator receiver domain (Response_reg) (8-117)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

3D structure

• AlphaFold DB: A0A3G9GPX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.145	99.55	0.579
pilR	Acinetobacter baumannii strain A118	43.656	100	0.457