Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY64_RS25400 Genome accession   NZ_CP102177
Coordinates   5710350..5711939 (+) Length   529 a.a.
NCBI ID   WP_265068286.1    Uniprot ID   -
Organism   Pseudomonas corrugata strain B21-055     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5705350..5716939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY64_RS25380 (LOY64_25395) pgeF 5707150..5707875 (-) 726 WP_024780728.1 peptidoglycan editing factor PgeF -
  LOY64_RS25385 (LOY64_25400) rluD 5707872..5708834 (-) 963 WP_024780729.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY64_RS25390 (LOY64_25405) - 5708985..5710001 (+) 1017 WP_024780730.1 outer membrane protein assembly factor BamD -
  LOY64_RS25395 (LOY64_25410) - 5710127..5710360 (+) 234 WP_080686285.1 PP0621 family protein -
  LOY64_RS25400 (LOY64_25415) pilS 5710350..5711939 (+) 1590 WP_265068286.1 nitrogen regulation protein NR(II) Regulator
  LOY64_RS25405 (LOY64_25420) pilR 5711936..5713279 (+) 1344 WP_053192135.1 sigma-54 dependent transcriptional regulator Regulator
  LOY64_RS25410 (LOY64_25425) - 5713472..5713837 (-) 366 WP_055135757.1 DUF6124 family protein -
  LOY64_RS25415 (LOY64_25430) thiO 5714567..5715667 (-) 1101 WP_024781125.1 glycine oxidase ThiO -
  LOY64_RS25420 (LOY64_25435) - 5715724..5716125 (-) 402 WP_024781124.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58599.08 Da        Isoelectric Point: 6.7503

>NTDB_id=715277 LOY64_RS25400 WP_265068286.1 5710350..5711939(+) (pilS) [Pseudomonas corrugata strain B21-055]
MTTEASSPRVRQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRSPARLF
GLALTDVLLLSWLFFAAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVGSSFFLGLHDSNPPGSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVTSLETLNALILQRMRTGILVLDRQHRVQLANESALNLLGRHDLVGQPID
NDSTALVDSLNVWLNNPSLRPPSLSIPSTGLTLQPSFIALGHNEQHQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLRTWLEQFVQQARESMAAH
QQLHLSIAPGDFTTLMDPDQLTQVLDNLLRNAWRHSAEAHERAEAWLELFVDPYSHLPTLDIIDNGPGVTPDQQVHLFEP
FFTTSNQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=715277 LOY64_RS25400 WP_265068286.1 5710350..5711939(+) (pilS) [Pseudomonas corrugata strain B21-055]
GTGACCACTGAGGCTTCAAGCCCTCGCGTCAGACAGACGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCTTGAGCAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAAAACACCCGAAGCCCTGCCCGGCTGTTT
GGCCTGGCCCTGACCGATGTGTTGCTGCTGTCATGGCTGTTCTTCGCGGCAGGCGGTGCCCCCAGTGCCATTGGCAATCT
GCTCATTGTTTCGGTGGCCATTGGCAATACGCTGCTGCGCGGCCGAATCGGCCTGTTGATCGCGGCCGTCGCCACGATCG
GCATCGTCGGGTCGAGTTTCTTCCTTGGCCTGCACGACTCGAACCCTCCCGGCAGTTATTTGCAGGCCGGTACCCTGGGA
GCGCTGTGCTTCGCCGCTGCGCTGCTGGTACAAGGCCTGACCAGGCGACTGGAAGCCAGCGAAACCCTCGCCGAGCAGCG
GGCCAGCGAAGTGACCAGCCTTGAAACCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTTGATC
GCCAACACCGGGTGCAATTGGCCAACGAAAGCGCTTTGAACCTGTTGGGCAGGCACGACCTGGTCGGCCAGCCAATCGAC
AACGACTCCACCGCACTCGTCGACAGTCTGAACGTGTGGCTGAACAACCCCAGCCTGCGCCCACCCAGCCTGTCCATCCC
CAGCACGGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGGCATAACGAACAGCATCAGATCCTGGTGTTCCTCGAAG
ATCTGGCCCAGGTCGCCCAACATGCCCAGCAGCTGAAACTCGCCTCGCTGGGGCGCCTCACCGCCGGCATCGCCCATGAA
ATCCGCAACCCCCTGGGGGCAATCAGCCATGCGGCGCAATTACTGCGCGAGTCCGAGGAACTGAACGACGCCGACCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCCCGGCGCCAGC
AAACCGCGCCTCAGCGCCTGGATCTGCGGACCTGGCTCGAGCAGTTTGTCCAACAAGCCCGCGAAAGCATGGCCGCGCAC
CAGCAATTGCATCTGAGCATCGCCCCGGGCGACTTCACCACGCTCATGGACCCCGATCAATTGACCCAGGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCGAGGCCCATGAGCGGGCCGAGGCCTGGCTGGAACTGTTCGTCGATCCCT
ACAGCCATCTCCCCACGCTGGACATCATCGACAACGGCCCCGGCGTGACACCGGACCAGCAGGTGCATCTGTTCGAGCCG
TTCTTCACCACCAGCAACCAGGGCACCGGCCTTGGTCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCGCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATTACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.155

97.732

0.588