Detailed information NTG0715249

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOY71_RS22465
• Genome accession: NZ_CP102176
• Coordinates: 5185351..5186694 (+)
• Length: 447 a.a.
• NCBI ID: WP_055127682.1
• Uniprot ID: -
• Organism: Pseudomonas mediterranea strain B21-060
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5180351..5191694

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOY71_RS22440 (LOY71_22445)	pgeF	5180564..5181289 (-)	726	WP_055127681.1	peptidoglycan editing factor PgeF	-
LOY71_RS22445 (LOY71_22450)	rluD	5181286..5182248 (-)	963	WP_047698321.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
LOY71_RS22450 (LOY71_22455)	-	5182399..5183415 (+)	1017	WP_047698322.1	outer membrane protein assembly factor BamD	-
LOY71_RS22455 (LOY71_22460)	-	5183542..5183775 (+)	234	WP_081993193.1	PP0621 family protein	-
LOY71_RS22460 (LOY71_22465)	pilS	5183765..5185354 (+)	1590	WP_047698324.1	nitrogen regulation protein NR(II)	Regulator
LOY71_RS22465 (LOY71_22470)	pilR	5185351..5186694 (+)	1344	WP_055127682.1	sigma-54 dependent transcriptional regulator	Regulator
LOY71_RS22470 (LOY71_22475)	thiO	5187469..5188584 (-)	1116	WP_055128500.1	glycine oxidase ThiO	-
LOY71_RS22475 (LOY71_22480)	-	5188641..5189042 (-)	402	WP_047702602.1	type IV pilin protein	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 50181.50 Da
• Isoelectric Point: 5.9903

>NTDB_id=715249 LOY71_RS22465 WP_055127682.1 5185351..5186694(+) (pilR) [Pseudomonas mediterranea strain B21-060]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSARNLAEAQSLLADEAFDLCLTDMRLPDGTGLELVQHIQQRFPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPTATAPTTIDRCLLGDSPPMRNVRKQIEKLARSQAP
VYISGESGCGKELVARLIHEQGPRSNRSFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAANGGTLFLDEVAD
LPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLAN
HMLQRLAATTGNPAARLHPQALEALRNYRFPGNVRELENMLERAYTLCEHQQIEADDLRLAEGNGITDATSPDLMRVDNL
EDYLEDVERKVILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1344 bp

>NTDB_id=715249 LOY71_RS22465 WP_055127682.1 5185351..5186694(+) (pilR) [Pseudomonas mediterranea strain B21-060]
TTGAATACACGCTCACGGCAACGGATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAGGAATCTTGCCGAGGCCCAATCCCTGCTGGCGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGCACATCCAACAACGCTTCCCGCAATTGCCC
GTGGCAATGATCACTGCCTACGGCAGTCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCTTTTGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGGGAACTGGTGACCAGCGCCCTGCGCTTGCCGACTGCCACCGCCCCGACCACCATCG
ACCGATGCCTGCTGGGCGACTCCCCGCCGATGCGCAACGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCACCG
GTGTACATCAGCGGGGAATCCGGCTGTGGCAAGGAGCTGGTGGCACGGCTGATCCACGAACAAGGGCCCCGCTCCAACCG
GAGTTTTGTGCCGGTCAACTGTGGGGCCATTCCGACAGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCT
TCAGCGGGGCCATCGAGGACAAGCCCGGTCTGTTCCAGGCCGCCAATGGTGGCACCCTGTTCCTCGATGAAGTGGCTGAC
CTGCCCTTGGCAATGCAGGTCAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAGCAGGAGGA
AGTGGTGGATGTCCGTATCCTCTGCGCCACCCATAAGGACCTGGACGCTGAAGTCGCCGCCGGGCGCTTTCGCCAGGACC
TGTACTACCGCCTGAACGTCATCGAATTGCGCGTCCCGCCCCTGCGTGAACGCCGCGAAGACATCGAACCGCTGGCCAAC
CACATGCTCCAGCGTCTGGCAGCCACCACCGGCAACCCCGCCGCCAGGCTCCATCCCCAGGCCCTTGAGGCTCTTCGAAA
CTACCGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATGCTCGAACGGGCCTACACCCTCTGCGAACACCAACAGATCG
AAGCCGACGACCTGCGCCTGGCCGAAGGCAATGGCATCACCGACGCCACCAGCCCCGATCTGATGCGGGTCGACAACCTG
GAAGACTATCTGGAAGACGTCGAACGCAAAGTCATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCAGC
CCAGCGATTGAAGCTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAATTAGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (404-444)

• Sigma-54 interaction domain (Sigma54_activat) (138-303)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	80.18	99.329	0.796
pilR	Acinetobacter baumannii strain A118	49.02	100	0.503