Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   LOY71_RS22460 Genome accession   NZ_CP102176
Coordinates   5183765..5185354 (+) Length   529 a.a.
NCBI ID   WP_047698324.1    Uniprot ID   -
Organism   Pseudomonas mediterranea strain B21-060     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5178765..5190354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOY71_RS22440 (LOY71_22445) pgeF 5180564..5181289 (-) 726 WP_055127681.1 peptidoglycan editing factor PgeF -
  LOY71_RS22445 (LOY71_22450) rluD 5181286..5182248 (-) 963 WP_047698321.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  LOY71_RS22450 (LOY71_22455) - 5182399..5183415 (+) 1017 WP_047698322.1 outer membrane protein assembly factor BamD -
  LOY71_RS22455 (LOY71_22460) - 5183542..5183775 (+) 234 WP_081993193.1 PP0621 family protein -
  LOY71_RS22460 (LOY71_22465) pilS 5183765..5185354 (+) 1590 WP_047698324.1 nitrogen regulation protein NR(II) Regulator
  LOY71_RS22465 (LOY71_22470) pilR 5185351..5186694 (+) 1344 WP_055127682.1 sigma-54 dependent transcriptional regulator Regulator
  LOY71_RS22470 (LOY71_22475) thiO 5187469..5188584 (-) 1116 WP_055128500.1 glycine oxidase ThiO -
  LOY71_RS22475 (LOY71_22480) - 5188641..5189042 (-) 402 WP_047702602.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58583.29 Da        Isoelectric Point: 7.3779

>NTDB_id=715248 LOY71_RS22460 WP_047698324.1 5183765..5185354(+) (pilS) [Pseudomonas mediterranea strain B21-060]
MITEASSPRVRQTQRLLRLYHLYRLSIGITLVLLISSNMDNRLLAFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFVAGGAPSAIGNLLIVSVAIGNTLLRGRIGLLIAAVATIGIVGSSFFLGLNDSNPPGSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAERRASEVTSLETLNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQPID
DYSTALVDSLKGWLNNPSLRPPSLTVTGSGLTLQPSFIALGHNEQHQTLVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTSPQRLDLRAWLEQFVQQARESMAAH
QQLHLSIAPGDYVTLMDPDQLTQVLDNLLRNAWRHSAQAHEQAEAWLELFVDPYSRLPMLDILDNGPGVTPDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=715248 LOY71_RS22460 WP_047698324.1 5183765..5185354(+) (pilS) [Pseudomonas mediterranea strain B21-060]
GTGATCACTGAGGCTTCAAGCCCCCGCGTCAGACAGACGCAGCGCCTGCTGCGTCTCTATCACCTGTACCGCTTGAGCAT
CGGCATCACCCTGGTGCTGCTGATTTCCAGCAACATGGACAACCGCCTGCTGGCCTTCGCCAACGACGACCTGCTGCGCA
GTGGCAGTTGGTTGTACCTGGTACTGAACATCCTGCTGGTGGTGTTCCTGGAAAACACCCGCCGCCCGGCCCGGCTGTTC
GGCCTGGCGCTCACCGACGTGCTGCTGCTGTCGTGGCTGTTCTTCGTCGCGGGCGGTGCCCCCAGTGCCATCGGCAACCT
GCTCATCGTCTCGGTGGCCATCGGCAATACGCTGTTGCGCGGCCGGATCGGCCTGTTGATCGCCGCGGTCGCCACGATCG
GCATCGTCGGCTCTAGTTTCTTCCTTGGCCTGAACGACTCGAACCCTCCCGGCAGCTATTTGCAGGCCGGTACCCTCGGT
GCGCTGTGCTTTGCCGCCGCGCTGCTGGTGCAGGGCCTGACCCGACGACTGGAAGCCAGCGAAACCCTGGCCGAGCGGCG
GGCCAGCGAGGTGACCAGCCTGGAAACCCTCAACGCCTTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGATC
GTCAACGCCGGGTGCAACTGGCCAACGAAAGCGCCTTGAACCTGTTGGGCATGCACGACCTGGTCGGCCAGCCAATCGAT
GACTACTCCACCGCCCTCGTCGACAGCCTGAAAGGATGGCTGAACAACCCCAGCCTGCGCCCACCCAGCCTGACCGTCAC
CGGCAGCGGCCTGACCCTGCAGCCGAGCTTCATCGCCCTGGGGCACAACGAGCAGCATCAGACCCTGGTGTTTCTCGAAG
ACCTGGCCCAGGTGGCCCAACATGCCCAACAACTGAAACTCGCCTCGCTGGGGCGCCTCACTGCCGGCATCGCCCATGAA
ATCCGCAACCCCCTGGGGGCAATCAGCCACGCGGCGCAATTACTGCGCGAGTCCGAGGAACTGAACGACGCCGACCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAACTGTCCCGGCGCCAGC
AAACCTCGCCTCAACGCCTGGACCTGCGGGCCTGGCTCGAACAGTTCGTCCAACAGGCCCGCGAAAGCATGGCCGCGCAC
CAGCAATTGCATCTGAGCATCGCCCCGGGCGACTACGTCACGCTCATGGACCCCGATCAATTGACCCAGGTGCTCGACAA
CCTGCTACGCAATGCCTGGCGCCACAGTGCCCAGGCCCATGAACAGGCCGAGGCCTGGCTGGAACTGTTCGTCGATCCCT
ACAGCCGCTTGCCCATGCTGGACATCCTCGACAACGGCCCCGGCGTGACACCGGACCAGCAGGCGCACCTGTTCGAACCG
TTCTTCACCACCAGCAGCCAGGGCACAGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.348

97.732

0.59