Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PQH37_RS06765 Genome accession   NZ_CP116948
Coordinates   1383004..1383741 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CUVET21-PYO5     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1378004..1388741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQH37_RS06735 (PQH37_06715) yfiL 1378162..1378527 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  PQH37_RS06740 (PQH37_06720) aroF 1378737..1379807 (+) 1071 WP_001168027.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PQH37_RS06745 (PQH37_06725) tyrA 1379818..1380939 (+) 1122 WP_000225209.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PQH37_RS06750 (PQH37_06730) pheA 1380982..1382142 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  PQH37_RS06755 (PQH37_06735) pheL 1382241..1382288 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PQH37_RS06760 (PQH37_06740) raiA 1382392..1382733 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PQH37_RS06765 (PQH37_06745) comL 1383004..1383741 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PQH37_RS06770 (PQH37_06750) rluD 1383876..1384856 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PQH37_RS06775 (PQH37_06755) yfiH 1384853..1385584 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  PQH37_RS06780 (PQH37_06760) clpC 1385714..1388287 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=715051 PQH37_RS06765 WP_000197686.1 1383004..1383741(-) (comL) [Escherichia coli strain CUVET21-PYO5]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=715051 PQH37_RS06765 WP_000197686.1 1383004..1383741(-) (comL) [Escherichia coli strain CUVET21-PYO5]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376