NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	NQZ88_RS03050	Genome accession	NZ_CP102152
Coordinates	573877..574467 (+)	Length	196 a.a.
NCBI ID	WP_074389118.1	Uniprot ID	A0AAP6DUB6
Organism	Streptococcus suis strain DNS11
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 568877..579467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NQZ88_RS03030 (NQZ88_03030)	-	569001..569831 (+)	831	WP_074389121.1	carbohydrate ABC transporter permease	-
NQZ88_RS03035 (NQZ88_03035)	gtfA	569901..571349 (+)	1449	WP_024410943.1	sucrose phosphorylase	-
NQZ88_RS03040 (NQZ88_03040)	-	571422..573038 (+)	1617	WP_074389120.1	alpha-glucosidase	-
NQZ88_RS03045 (NQZ88_03045)	upp	573121..573750 (+)	630	WP_074389119.1	uracil phosphoribosyltransferase	-
NQZ88_RS03050 (NQZ88_03050)	clpP	573877..574467 (+)	591	WP_074389118.1	ATP-dependent Clp protease proteolytic subunit	Regulator
NQZ88_RS03055 (NQZ88_03055)	-	574584..574850 (+)	267	WP_074389117.1	DUF2129 domain-containing protein	-
NQZ88_RS03060 (NQZ88_03060)	-	574989..576158 (+)	1170	WP_074389116.1	ABC transporter substrate-binding protein	-
NQZ88_RS03065 (NQZ88_03065)	-	576359..577246 (+)	888	WP_012027482.1	branched-chain amino acid ABC transporter permease	-
NQZ88_RS03070 (NQZ88_03070)	-	577249..578196 (+)	948	WP_002937293.1	branched-chain amino acid ABC transporter permease	-
NQZ88_RS03075 (NQZ88_03075)	-	578196..578960 (+)	765	WP_002937291.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21480.71 Da Isoelectric Point: 5.7110

                                >NTDB_id=715052 NQZ88_RS03050 WP_074389118.1 573877..574467(+) (clpP) [Streptococcus suis strain DNS11]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK

TVKQIHKDAERDYWMTAEETLAYGFIDQIMDNTKAK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=715052 NQZ88_RS03050 WP_074389118.1 573877..574467(+) (clpP) [Streptococcus suis strain DNS11]

ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAACGTTCTTATGATATTTATTCACGCCTATTGAAAGATCGTAT

TATCATGCTGACAGGACCAGTTGAGGATAATATGGCAAATTCAATCATTGCCCAGTTGCTTTTCCTTGATGCCCAAGACC

CAACCAAAGATATTTACCTTTATGTAAATACACCTGGTGGATCTGTGTCAGCTGGTCTAGCTATTGTAGATACCATGAAC

TTTATCAAGGCTGATGTGCAAACCATCGTAATGGGGACAGCTGCCAGCATGGGTACAATTATCGCTTCAAGCGGTGCCAA

GGGCAAACGTTTCATGTTGCCAAATGCAGAATACATGATTCACCAGCCAATGGGTGGAACTGGTGGCGGTACACAGCAAA

CGGATATGGCCATTGCAGCGGAACACTTGCTTAAAACCCGTAACAAATTAGAAAAAATCTTGGCTGATAATTCAGGTAAA

ACTGTGAAACAAATCCACAAGGATGCAGAACGCGATTACTGGATGACAGCTGAAGAAACATTAGCTTACGGATTTATTGA

CCAAATTATGGACAATACGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	91.837	100	0.918
clpP	Streptococcus pyogenes MGAS315	91.837	100	0.918
clpP	Streptococcus mutans UA159	90.306	100	0.903
clpP	Streptococcus pneumoniae R6	90.104	97.959	0.883
clpP	Streptococcus pneumoniae Rx1	90.104	97.959	0.883
clpP	Streptococcus pneumoniae D39	90.104	97.959	0.883
clpP	Streptococcus pneumoniae TIGR4	90.104	97.959	0.883
clpP	Streptococcus thermophilus LMG 18311	88.265	100	0.883
clpP	Streptococcus thermophilus LMD-9	88.265	100	0.883
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	84.184	100	0.842
clpP	Lactococcus lactis subsp. cremoris KW2	83.673	100	0.837
clpP	Bacillus subtilis subsp. subtilis str. 168	57.653	100	0.577
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571

Detailed information NTG0715052