Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   NQZ91_RS10745 Genome accession   NZ_CP102145
Coordinates   2137917..2138918 (+) Length   333 a.a.
NCBI ID   WP_283241320.1    Uniprot ID   -
Organism   Streptococcus suis strain DNS20     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 2132917..2143918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ91_RS10720 (NQZ91_10720) - 2133318..2133536 (+) 219 WP_172022051.1 hypothetical protein -
  NQZ91_RS10725 (NQZ91_10725) - 2133549..2133983 (+) 435 WP_172079969.1 CoA-binding protein -
  NQZ91_RS10730 (NQZ91_10730) - 2134054..2134908 (-) 855 WP_257117537.1 DUF975 family protein -
  NQZ91_RS10735 (NQZ91_10735) tgt 2135049..2136191 (+) 1143 WP_257117538.1 tRNA guanosine(34) transglycosylase Tgt -
  NQZ91_RS10740 (NQZ91_10740) - 2136627..2137712 (-) 1086 WP_105160576.1 Xaa-Pro peptidase family protein -
  NQZ91_RS10745 (NQZ91_10745) ccpA 2137917..2138918 (+) 1002 WP_283241320.1 catabolite control protein A Regulator
  NQZ91_RS10750 (NQZ91_10750) - 2139154..2139828 (+) 675 WP_105160575.1 hydrolase -
  NQZ91_RS10760 (NQZ91_10760) - 2140039..2141223 (-) 1185 WP_172067122.1 chloride channel protein -
  NQZ91_RS10765 (NQZ91_10765) - 2141216..2141491 (-) 276 WP_172067121.1 chorismate mutase -
  NQZ91_RS10770 (NQZ91_10770) - 2141835..2142287 (-) 453 WP_105110414.1 flavodoxin -
  NQZ91_RS10775 (NQZ91_10775) - 2142383..2143327 (+) 945 WP_257104717.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36545.70 Da        Isoelectric Point: 5.3223

>NTDB_id=714974 NQZ91_RS10745 WP_283241320.1 2137917..2138918(+) (ccpA) [Streptococcus suis strain DNS20]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIERLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEKQLPS
VNIDYAAASKDAVTLLAKNNKKIAFVSGPLVDDINGKVRFAGYKDGLQEAGLDFSEGLVFESKYKYEEGYALAERILNAG
ATAALVAEDEIAAGLLNGISDKGLSVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENREV
ILNHGIKVRKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=714974 NQZ91_RS10745 WP_283241320.1 2137917..2138918(+) (ccpA) [Streptococcus suis strain DNS20]
TTGAATACTGATGATACGGTAACGATATATGACGTTGCCCGCGAAGCTGGGGTCTCTATGGCGACCGTTTCCCGCGTTGT
AAATGGAAATAAGAACGTTAAGGAAAATACCCGCAAAAAAGTCTTAGAGGTCATCGAGCGCTTGGATTACCGTCCTAACG
CCGTTGCCCGTGGTTTGGCCAGCAAGAAGACGACGACTGTTGGTGTGGTTATCCCAAATATTGCTAACGCCTACTTTGCA
ACCCTGGCTAAGGGGATTGATGATATTGCTGATATGTATAAGTATAATATCGTCCTTGCCAATAGCGATGAGAACGATGA
AAAAGAGATTAATGTGGTCAACACCCTCTTTTCAAAACAGGTGGATGGTATCATTTTCATGGGCTACCATTTGACAGATA
AGATTCGGGCGGAGTTTTCTCGTTCACGTACACCGATCGTTCTGGCTGGTACAGTTGATTTGGAAAAACAATTGCCGAGC
GTTAACATTGACTACGCTGCAGCAAGCAAGGATGCGGTTACCCTGTTGGCTAAAAACAACAAGAAAATCGCCTTTGTATC
TGGACCGTTGGTTGATGATATCAATGGCAAGGTCCGCTTTGCTGGTTATAAGGATGGCTTGCAAGAAGCGGGCTTGGACT
TTAGCGAAGGCCTAGTCTTTGAATCTAAGTATAAGTATGAAGAGGGCTATGCCCTTGCTGAACGTATCTTGAACGCAGGT
GCGACGGCAGCCTTGGTGGCAGAAGATGAAATTGCAGCAGGTCTCTTGAATGGTATTTCAGACAAGGGTCTCAGCGTTCC
AGAAGATTTTGAAATCATTACAAGCGATGATTCACTGGTGACCAAGTTTACACGACCTAACCTGACTTCTATCAATCAGC
CATTGTATGATATTGGTGCCATTGCCATGCGGATGCTGACCAAAATCATGCACAAGGAAGAATTGGAAAACCGTGAAGTC
ATTCTGAATCACGGCATTAAGGTTCGCAAATCTACCAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

80.18

100

0.802

  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

100

0.79

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

59.215

99.399

0.589