Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   FFK26_RS01875 Genome accession   NZ_AP024130
Coordinates   410819..411451 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain SI-NP020     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 405819..416451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFK26_RS01850 (BvCmsSINP020_0363) yhfG 405951..406118 (+) 168 WP_000736860.1 YhfG family protein -
  FFK26_RS01855 (BvCmsSINP020_0364) fic 406108..406710 (+) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  FFK26_RS01860 (BvCmsSINP020_0365) pabA 406742..407305 (+) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  FFK26_RS01865 (BvCmsSINP020_0366) argD 407391..408611 (+) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  FFK26_RS01870 (BvCmsSINP020_0367) yhfK 408678..410768 (-) 2091 WP_001345983.1 YccS/YhfK family putative transporter -
  FFK26_RS01875 (BvCmsSINP020_0368) crp 410819..411451 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  FFK26_RS01880 (BvCmsSINP020_0369) yhfA 411753..412157 (+) 405 WP_001148908.1 OsmC family protein -
  FFK26_RS01885 (BvCmsSINP020_0370) prkB 412212..413081 (-) 870 WP_001274684.1 phosphoribulokinase -
  FFK26_RS01890 (BvCmsSINP020_0371) yheU 413135..413353 (-) 219 WP_000907085.1 YheU family protein -
  FFK26_RS01895 (BvCmsSINP020_0372) yheT 413347..414369 (-) 1023 WP_000057356.1 hydrolase -
  FFK26_RS01900 (BvCmsSINP020_0373) yheS 414369..416282 (-) 1914 WP_000634793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=71493 FFK26_RS01875 WP_000242755.1 410819..411451(-) (crp) [Escherichia coli strain SI-NP020]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=71493 FFK26_RS01875 WP_000242755.1 410819..411451(-) (crp) [Escherichia coli strain SI-NP020]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAAGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment