Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   NQZ98_RS03695 Genome accession   NZ_CP102135
Coordinates   703852..704856 (+) Length   334 a.a.
NCBI ID   WP_004298830.1    Uniprot ID   -
Organism   Streptococcus suis strain M106471_S40     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 698852..709856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ98_RS03675 (NQZ98_03675) - 698911..699351 (+) 441 WP_141600576.1 CoA-binding protein -
  NQZ98_RS03680 (NQZ98_03680) - 699643..700485 (-) 843 WP_171997279.1 DUF975 family protein -
  NQZ98_RS03685 (NQZ98_03685) tgt 700973..702115 (+) 1143 WP_044758836.1 tRNA guanosine(34) transglycosylase Tgt -
  NQZ98_RS03690 (NQZ98_03690) - 702557..703642 (-) 1086 WP_105158789.1 Xaa-Pro peptidase family protein -
  NQZ98_RS03695 (NQZ98_03695) ccpA 703852..704856 (+) 1005 WP_004298830.1 catabolite control protein A Regulator
  NQZ98_RS03700 (NQZ98_03700) - 705277..707289 (-) 2013 WP_105158788.1 Spy0128 family protein -
  NQZ98_RS03705 (NQZ98_03705) - 707599..708597 (+) 999 WP_014637671.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36786.97 Da        Isoelectric Point: 5.5173

>NTDB_id=714574 NQZ98_RS03695 WP_004298830.1 703852..704856(+) (ccpA) [Streptococcus suis strain M106471_S40]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=714574 NQZ98_RS03695 WP_004298830.1 703852..704856(+) (ccpA) [Streptococcus suis strain M106471_S40]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAACATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATTAATGTAGTAAATACCCTATTTTCAAAACAGGTGGACGGAATCATTTTCATGGGTTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGATTTGGAGCACCAATTACCT
AGTGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTGTTAGCTAAGAACAATAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAATGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTCTATTGAATGGTGTCAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATATGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584