Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   NQU90_RS17675 Genome accession   NZ_CP102108
Coordinates   3856872..3857192 (+) Length   106 a.a.
NCBI ID   WP_257123689.1    Uniprot ID   -
Organism   Aeromonas veronii strain GD21SC2322TT     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3851872..3862192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU90_RS17660 (NQU90_17660) yfbV 3852312..3852752 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  NQU90_RS17665 (NQU90_17665) - 3853057..3854259 (+) 1203 WP_005349210.1 acetate kinase -
  NQU90_RS17670 (NQU90_17670) pta 3854314..3856494 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  NQU90_RS17675 (NQU90_17675) comE1/comEA 3856872..3857192 (+) 321 WP_257123689.1 ComEA family DNA-binding protein Machinery gene
  NQU90_RS17680 (NQU90_17680) galU 3857289..3858200 (+) 912 WP_115521678.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NQU90_RS17685 (NQU90_17685) - 3858414..3859811 (+) 1398 WP_150997404.1 peptide MFS transporter -
  NQU90_RS17690 (NQU90_17690) - 3859886..3860857 (-) 972 WP_257123690.1 response regulator -
  NQU90_RS17695 (NQU90_17695) - 3861097..3861795 (+) 699 WP_257123691.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11370.39 Da        Isoelectric Point: 9.9854

>NTDB_id=714462 NQU90_RS17675 WP_257123689.1 3856872..3857192(+) (comE1/comEA) [Aeromonas veronii strain GD21SC2322TT]
MLMKKLSAIMLLACLHLFSQPVLAVDKAAPKQTTTTTVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=714462 NQU90_RS17675 WP_257123689.1 3856872..3857192(+) (comE1/comEA) [Aeromonas veronii strain GD21SC2322TT]
ATGCTGATGAAGAAGCTCTCTGCTATCATGCTGCTGGCCTGCTTGCACCTGTTCAGCCAACCTGTGCTGGCTGTAGATAA
GGCAGCGCCCAAGCAAACAACCACGACCACGGTTGCCAAGGAGACCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTGACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

48.214

100

0.509
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

91.509

0.396
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368