Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NQU59_RS05130 Genome accession   NZ_CP102099
Coordinates   1077283..1077807 (+) Length   174 a.a.
NCBI ID   WP_043972843.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072283..1082807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS05125 (NQU59_05125) - 1072917..1077272 (+) 4356 WP_257065259.1 PilC/PilY family type IV pilus protein -
  NQU59_RS05130 (NQU59_05130) comE 1077283..1077807 (+) 525 WP_043972843.1 type IV pilin protein Machinery gene
  NQU59_RS05135 (NQU59_05135) pilE 1077807..1078271 (+) 465 WP_043972846.1 type IV pilin protein Machinery gene
  NQU59_RS05140 (NQU59_05140) - 1078634..1079221 (+) 588 WP_257065260.1 GspH/FimT family pseudopilin -
  NQU59_RS05145 (NQU59_05145) pilV 1079218..1079706 (+) 489 WP_005238423.1 type IV pilus modification protein PilV Machinery gene
  NQU59_RS05150 (NQU59_05150) - 1079708..1080733 (+) 1026 WP_151837770.1 PilW family protein -
  NQU59_RS05155 (NQU59_05155) pilX 1080730..1081482 (+) 753 WP_042876170.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19094.63 Da        Isoelectric Point: 9.3121

>NTDB_id=714400 NQU59_RS05130 WP_043972843.1 1077283..1077807(+) (comE) [Acinetobacter colistiniresistens strain C-214]
MRNYQFQFKLNQGFTLIELMLVLIIVAIFTAIALPSYQNYGRRANAAAAQQEMQKLAEQLERHKSRNFSYKGFSAQYLYN
STGTTPFDGSTQTLTVPLNATGASVRYTLTIVDGMTGNPLLSASDATGQSWAIRAISADVQNFSFLMTSTGLRCQNKTIA
NITYATCGTGGESW

Nucleotide


Download         Length: 525 bp        

>NTDB_id=714400 NQU59_RS05130 WP_043972843.1 1077283..1077807(+) (comE) [Acinetobacter colistiniresistens strain C-214]
ATGCGAAACTACCAATTCCAATTTAAGCTCAATCAAGGATTTACCTTGATTGAGCTTATGCTAGTATTGATTATTGTTGC
TATTTTTACGGCAATTGCGCTACCGAGTTATCAAAATTATGGACGTCGTGCAAATGCTGCTGCAGCTCAACAAGAAATGC
AAAAGTTGGCGGAACAACTTGAGCGGCATAAATCGAGAAATTTTAGTTATAAAGGTTTTAGTGCGCAGTATTTGTATAAT
TCAACTGGAACAACACCGTTTGATGGAAGTACCCAAACTTTGACAGTCCCTTTAAATGCGACAGGTGCATCGGTTAGGTA
TACATTAACCATTGTTGATGGAATGACTGGAAACCCACTTCTGTCTGCATCTGATGCTACGGGCCAAAGTTGGGCGATTC
GGGCGATTAGTGCAGATGTACAAAACTTTTCATTTTTAATGACGAGTACTGGGTTACGTTGTCAGAATAAAACGATTGCA
AATATTACGTATGCCACATGTGGAACAGGTGGGGAAAGTTGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(35-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

60.241

95.402

0.575
  pilY2 Acinetobacter baumannii D1279779

43.333

100

0.448