Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NQU59_RS05155 Genome accession   NZ_CP102099
Coordinates   1080730..1081482 (+) Length   250 a.a.
NCBI ID   WP_042876170.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1075730..1086482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS05130 (NQU59_05130) comE 1077283..1077807 (+) 525 WP_043972843.1 type IV pilin protein Machinery gene
  NQU59_RS05135 (NQU59_05135) pilE 1077807..1078271 (+) 465 WP_043972846.1 type IV pilin protein Machinery gene
  NQU59_RS05140 (NQU59_05140) - 1078634..1079221 (+) 588 WP_257065260.1 GspH/FimT family pseudopilin -
  NQU59_RS05145 (NQU59_05145) pilV 1079218..1079706 (+) 489 WP_005238423.1 type IV pilus modification protein PilV Machinery gene
  NQU59_RS05150 (NQU59_05150) - 1079708..1080733 (+) 1026 WP_151837770.1 PilW family protein -
  NQU59_RS05155 (NQU59_05155) pilX 1080730..1081482 (+) 753 WP_042876170.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NQU59_RS05160 (NQU59_05160) - 1081495..1086008 (+) 4514 Protein_984 pilus assembly protein PilY -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27294.05 Da        Isoelectric Point: 8.1008

>NTDB_id=714403 NQU59_RS05155 WP_042876170.1 1080730..1081482(+) (pilX) [Acinetobacter colistiniresistens strain C-214]
MINAQRGSTLIIVLMIVLMITIVGTLAIRQSISSLKLVSNHQIQTLLAQNADTALMYFQDPNTQQNLASANGVVGFFKNE
NNKNAELVFCFSGTDPFALTKAAYRLNSANFEPMASNAGMCKVDSSNAANDTASQSSGRKQVVTQVYIKREINPTAPFAD
LSRGTEVFGAKTENNIRLRVYVVSVMQGLLTSDALFKADRDINKGCLTKSIDNNGANDVATCLKQNIEKPLYNIQVAEYR
FLSDFEPSSS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=714403 NQU59_RS05155 WP_042876170.1 1080730..1081482(+) (pilX) [Acinetobacter colistiniresistens strain C-214]
ATGATAAACGCACAACGTGGTTCAACACTGATTATTGTCTTAATGATTGTGCTGATGATTACCATTGTTGGCACACTGGC
AATTCGGCAAAGTATCAGTTCGCTTAAATTGGTCAGTAATCATCAGATACAGACGCTACTGGCACAAAATGCGGATACTG
CACTGATGTATTTTCAGGATCCCAATACCCAGCAAAACTTAGCTTCTGCCAATGGTGTGGTTGGTTTCTTTAAAAATGAA
AATAATAAAAATGCTGAACTGGTCTTCTGCTTTTCAGGAACGGATCCATTTGCCCTAACCAAAGCTGCATATCGCTTAAA
TAGTGCCAACTTTGAACCGATGGCAAGCAATGCCGGGATGTGTAAAGTTGATTCGAGTAACGCAGCCAATGACACAGCCT
CTCAATCCAGTGGTCGTAAACAAGTGGTGACACAGGTTTATATTAAAAGAGAAATCAACCCTACAGCACCCTTTGCAGAT
TTATCTCGTGGAACGGAAGTATTTGGAGCAAAAACGGAAAACAATATTCGCTTAAGGGTCTATGTGGTGTCCGTGATGCA
AGGCTTATTAACTTCGGATGCTTTATTTAAAGCAGATCGTGATATTAACAAAGGTTGTTTAACTAAAAGTATCGACAATA
ACGGTGCCAATGATGTTGCTACTTGCTTAAAACAAAATATAGAAAAACCGTTATATAACATACAAGTCGCAGAATATCGT
TTCTTGTCTGACTTTGAACCTTCGAGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(6-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

51.807

99.6

0.516