Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NQU59_RS05120 Genome accession   NZ_CP102099
Coordinates   1072097..1072906 (+) Length   269 a.a.
NCBI ID   WP_043972838.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1067097..1077906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS05090 (NQU59_05090) rpoZ 1067696..1067974 (-) 279 WP_004657467.1 DNA-directed RNA polymerase subunit omega -
  NQU59_RS05095 (NQU59_05095) gmk 1068045..1068668 (-) 624 WP_005238402.1 guanylate kinase -
  NQU59_RS05100 (NQU59_05100) ispH 1068772..1069722 (+) 951 WP_005238404.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NQU59_RS05105 (NQU59_05105) - 1069863..1070369 (+) 507 WP_043972830.1 Tfp pilus assembly protein FimT/FimU -
  NQU59_RS05110 (NQU59_05110) pilV 1070366..1070929 (+) 564 WP_257065258.1 type IV pilus modification protein PilV Machinery gene
  NQU59_RS05115 (NQU59_05115) pilW 1070931..1072100 (+) 1170 WP_043972835.1 PilW family protein Machinery gene
  NQU59_RS05120 (NQU59_05120) pilX 1072097..1072906 (+) 810 WP_043972838.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NQU59_RS05125 (NQU59_05125) - 1072917..1077272 (+) 4356 WP_257065259.1 PilC/PilY family type IV pilus protein -
  NQU59_RS05130 (NQU59_05130) comE 1077283..1077807 (+) 525 WP_043972843.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28491.32 Da        Isoelectric Point: 7.6642

>NTDB_id=714399 NQU59_RS05120 WP_043972838.1 1072097..1072906(+) (pilX) [Acinetobacter colistiniresistens strain C-214]
MNHPKRTYLKHQRGATLIVVMIILLIIIVVGILAVRVAIVSLGVATNSQVGQLNFQSSDAPLAWFNNFDPTTVTSVGNVI
GAALKENESNPGGEYIFCYKPTTNSFAQTINSSLMRKADSGNIATVEAGGVAGFCNLTSDFGSNRPAVVTQVAVSIPTEA
LNNKPGANLPRGINVSEGTQLPKSMTSAQRIRVTTTAMLPAYTSDISSVQRDCLSSSNAKISDDLNATLGTGSEYTLAKC
LTDKGVPFTTQVQEFNYVNQLTEVTAPGN

Nucleotide


Download         Length: 810 bp        

>NTDB_id=714399 NQU59_RS05120 WP_043972838.1 1072097..1072906(+) (pilX) [Acinetobacter colistiniresistens strain C-214]
ATGAACCATCCAAAACGCACATATTTAAAACATCAGCGTGGTGCGACCTTAATTGTAGTCATGATCATATTACTAATCAT
TATTGTGGTTGGAATACTTGCTGTTCGAGTTGCTATTGTTTCATTGGGAGTAGCAACAAATAGTCAAGTCGGTCAATTAA
ATTTTCAATCCTCCGATGCTCCGTTGGCATGGTTCAATAATTTTGATCCAACAACGGTAACCAGCGTTGGTAATGTGATT
GGAGCTGCACTAAAAGAAAATGAAAGTAACCCAGGTGGGGAATATATTTTCTGTTATAAACCCACGACAAATAGTTTTGC
TCAGACCATTAATTCGAGTCTGATGCGTAAAGCTGATTCAGGAAATATTGCAACAGTTGAAGCGGGAGGGGTGGCTGGTT
TTTGTAATTTAACCTCAGATTTTGGCAGTAATCGTCCTGCTGTTGTCACTCAAGTTGCAGTAAGCATTCCAACTGAGGCA
CTGAATAATAAGCCAGGCGCAAATTTACCTCGAGGAATTAATGTTTCTGAGGGGACACAGTTACCTAAAAGCATGACTTC
TGCCCAACGAATTCGTGTAACCACAACGGCGATGTTACCTGCATATACCAGTGATATCTCCTCTGTACAAAGAGATTGTT
TAAGCTCGAGCAATGCCAAAATTAGTGACGATCTTAACGCGACTTTAGGTACAGGTAGTGAATATACCTTGGCAAAATGT
CTTACTGATAAAGGTGTTCCATTTACTACCCAAGTACAAGAATTTAACTACGTGAACCAATTAACTGAAGTCACTGCTCC
AGGAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

68.077

96.654

0.658