Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   NQU59_RS05115 Genome accession   NZ_CP102099
Coordinates   1070931..1072100 (+) Length   389 a.a.
NCBI ID   WP_043972835.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065931..1077100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS05090 (NQU59_05090) rpoZ 1067696..1067974 (-) 279 WP_004657467.1 DNA-directed RNA polymerase subunit omega -
  NQU59_RS05095 (NQU59_05095) gmk 1068045..1068668 (-) 624 WP_005238402.1 guanylate kinase -
  NQU59_RS05100 (NQU59_05100) ispH 1068772..1069722 (+) 951 WP_005238404.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  NQU59_RS05105 (NQU59_05105) - 1069863..1070369 (+) 507 WP_043972830.1 Tfp pilus assembly protein FimT/FimU -
  NQU59_RS05110 (NQU59_05110) pilV 1070366..1070929 (+) 564 WP_257065258.1 type IV pilus modification protein PilV Machinery gene
  NQU59_RS05115 (NQU59_05115) pilW 1070931..1072100 (+) 1170 WP_043972835.1 PilW family protein Machinery gene
  NQU59_RS05120 (NQU59_05120) pilX 1072097..1072906 (+) 810 WP_043972838.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 41383.60 Da        Isoelectric Point: 7.1327

>NTDB_id=714398 NQU59_RS05115 WP_043972835.1 1070931..1072100(+) (pilW) [Acinetobacter colistiniresistens strain C-214]
MKKNNAKSQSGFTLIELMVALVLGLIVVAAAVQLFTGGILSSRLQQANAEIQDSGIFGLDYIVRDIRFANQDNLANLKLD
DKTPYGGIVLTGLTATSSTNVNFVPKVSSSAYIDSALLSRGQDDTVSTTSNYWKGLTRVTLKDSAGAVIANPVSDQLTIQ
FFAPTQMTNCEGATVLPGDLVVQRYFVRPDNNGASTDYALACDANTPSATTADVKAAATARTTVNATTETISPLPITGLG
DAGQIIIPRVDHFHVLLGAMVTTETTTTVTNRTVTPATSTTTKTVSNQFGYYTIPQYRTLAQTTATDNTTGTGSKVETNI
KVTVSSRILSTQISVLVRSANNAQNQAIDPTQPLLMLDQTATPSDTTTRYQRRVYSTTVALRNAMGDSL

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=714398 NQU59_RS05115 WP_043972835.1 1070931..1072100(+) (pilW) [Acinetobacter colistiniresistens strain C-214]
ATGAAAAAAAATAATGCGAAGTCACAGTCAGGTTTTACTTTAATTGAGTTAATGGTTGCACTGGTTCTTGGCCTAATAGT
TGTTGCAGCTGCAGTGCAATTGTTTACGGGAGGAATTCTTTCAAGCCGTTTGCAGCAAGCTAATGCTGAAATTCAGGACA
GTGGCATTTTTGGTTTAGATTATATTGTTCGAGACATTCGATTTGCGAATCAAGACAATTTAGCTAATCTAAAACTGGAT
GATAAAACACCTTATGGTGGAATTGTTTTAACGGGGTTAACCGCAACAAGTTCAACCAATGTTAACTTTGTACCGAAAGT
GAGTAGTTCGGCTTACATTGATTCTGCTTTATTAAGCCGTGGGCAGGATGATACTGTTTCAACTACATCAAACTATTGGA
AAGGACTAACTCGAGTAACTTTAAAAGACTCAGCAGGTGCTGTGATTGCAAATCCTGTAAGTGATCAATTGACGATTCAA
TTTTTTGCACCAACGCAGATGACCAACTGTGAAGGTGCGACTGTCTTGCCTGGAGATTTGGTTGTTCAACGTTATTTTGT
ACGTCCAGATAATAATGGGGCTTCTACAGACTATGCTTTAGCTTGTGATGCAAATACCCCATCAGCAACAACTGCTGATG
TTAAGGCTGCTGCCACAGCGCGAACAACTGTGAACGCAACAACAGAGACAATTTCTCCTTTACCAATTACAGGTTTAGGT
GATGCAGGACAAATTATTATTCCTCGTGTTGATCATTTTCATGTTTTACTTGGGGCAATGGTAACAACCGAAACTACAAC
TACCGTTACCAATAGAACAGTGACGCCAGCAACTTCTACAACGACAAAAACAGTCTCAAATCAATTTGGTTACTATACGA
TTCCACAGTATCGTACATTAGCTCAAACTACAGCGACAGATAACACGACAGGTACTGGAAGTAAAGTAGAAACCAATATA
AAAGTAACAGTGAGCTCACGAATTTTATCAACGCAGATTTCAGTATTAGTACGTTCCGCAAATAATGCACAAAATCAGGC
CATTGACCCAACTCAGCCGCTCTTAATGTTGGATCAAACAGCTACGCCATCAGATACAACGACACGTTATCAACGTCGGG
TATATAGCACCACTGTTGCACTACGTAATGCAATGGGAGATTCACTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-31)

Type IV Pilus-assembly protein W (PilW)

(216-383)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

55.325

98.972

0.548