Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NQU59_RS02110 Genome accession   NZ_CP102099
Coordinates   446024..447460 (+) Length   478 a.a.
NCBI ID   WP_005240229.1    Uniprot ID   N9PRT5
Organism   Acinetobacter colistiniresistens strain C-214     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 441024..452460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS02090 (NQU59_02090) thrC 441227..442366 (+) 1140 WP_004802157.1 threonine synthase -
  NQU59_RS02095 (NQU59_02095) pbpG 442498..443562 (-) 1065 WP_128568544.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NQU59_RS02100 (NQU59_02100) - 443774..444409 (+) 636 WP_257064781.1 response regulator -
  NQU59_RS02105 (NQU59_02105) pilS 444436..446001 (+) 1566 WP_257064782.1 PAS domain-containing sensor histidine kinase Regulator
  NQU59_RS02110 (NQU59_02110) pilR 446024..447460 (+) 1437 WP_005240229.1 sigma-54 dependent transcriptional regulator Regulator
  NQU59_RS02115 (NQU59_02115) - 447511..448686 (-) 1176 WP_096911339.1 S41 family peptidase -
  NQU59_RS02120 (NQU59_02120) gpmI 448696..450240 (-) 1545 WP_257064783.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  NQU59_RS02125 (NQU59_02125) lptG 450354..451424 (-) 1071 WP_005240235.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53495.46 Da        Isoelectric Point: 6.2462

>NTDB_id=714383 NQU59_RS02110 WP_005240229.1 446024..447460(+) (pilR) [Acinetobacter colistiniresistens strain C-214]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQMHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWDLPAKSLSTRAEQFLLQQYFPGNVRELRNIIERAITLSDDDNIDLAHLQTAPLRSTLANPAASFSAT
PAEEAEPVQHSASTTLSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDEE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=714383 NQU59_RS02110 WP_005240229.1 446024..447460(+) (pilR) [Acinetobacter colistiniresistens strain C-214]
ATGGCAACAAAACAACCACTCGTCTTATTGGTAGACGACGAAGAAGATTTATGTCTTTTAATGCAGATGACGCTGGCGCG
GATGGGCATTAAAACACATCTCGCCTATCGGGTCGAACAGGCTAAAAAATTCTTTACTGAATTCCAGTATGATGCCTGTT
TAACAGATTTAAATCTTCCTGATGGAAATGGTTTGGATCTGGTCAAACATGTAACTCAAAACTATCCCAACACGCCAATT
GCCGTATTAACAGCTTATGGCAATATGGATATCGCGATTGCTGCACTCAAAGCAGGTGCATTCGATTTTGTCAGCAAACC
TGTCAACCAAATGCATTTGGATCAACTGATCCAGAAAGCACTGAACCGTCCGCAGCCTGAGCAAGAAGCAGCAGAAACAG
CCTTAGAAAACAAGCTATTAATCGGACGTTCCGCACCCATTCAACAACTACGCATTGCTTTAAAGAAAATTGCACGCTCC
CAAGCCCCAGTGTTCATTACTGGTGAATCAGGCACAGGTAAAGAAGTGGTAGCGAATCTTGTGCACCGCTTAAGTAATCG
CAGTGAAGGGCCTTTTATTGCCATCAATTGTGGTGCAATTCCAACCGAGTTGATGGAAAGTGAGCTGTTTGGACACAAAA
AAGGTAGCTTCACAGGTGCAACTCAGGATAAGCAAGGCTTAATTCTGTCTGCTCACGGTGGTAGTTTATTTTTAGATGAA
ATTGCTGAATTACCGTTAAATATGCAGGTCAAACTGCTGCGTGCTGTTCAGGAAAAGAAAATTCGTCCAGTGGGTTCGGA
TCAAGAAATTGATGTAGATTTTCGTGTGATTAGTGCCAGTCATCAAGATTTAGAGCTGTTGGTTCAGCAAGGCCGCTTCC
GTCAAGATTTGTTCTTCCGTATTCATGTGATGGATATCGTACTGCCACCTTTACGTGAGCGTGGGCAAGATATTTTGCTG
TTGGCCAACCACTTTATTCAAAAGATTAGCCAAGAATGGGATCTACCCGCAAAATCGCTCTCTACACGTGCTGAACAATT
TTTGTTGCAACAGTATTTCCCTGGGAATGTGCGGGAATTACGCAATATTATTGAGCGTGCCATTACCCTTAGTGATGATG
ACAACATTGATTTGGCACATTTACAGACCGCGCCTTTGCGGAGCACACTGGCCAATCCAGCCGCTTCGTTTTCGGCTACG
CCTGCAGAAGAAGCTGAACCAGTTCAACATTCTGCCAGCACGACACTGAGCTCGAAAAAACTTCCACCTGAAGGCTTGGA
GCGTTATTTAGAAAATATTGAAAAAGAAATTCTCCTCAATGCACTCAACCTGACCCATTGGAATCGGACGTTAGCAGCGA
AAAAGTTAGGTATGACTTTCCGTTCGTTACGTTATCGGCTGAAAAAATTCGGCTTGGATACCGAAGACGAAGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9PRT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

83.473

100

0.835
  pilR Pseudomonas aeruginosa PAK

50.429

97.49

0.492