Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NQU59_RS02105 Genome accession   NZ_CP102099
Coordinates   444436..446001 (+) Length   521 a.a.
NCBI ID   WP_257064782.1    Uniprot ID   -
Organism   Acinetobacter colistiniresistens strain C-214     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 439436..451001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQU59_RS02085 (NQU59_02085) - 439820..441121 (+) 1302 WP_257064778.1 homoserine dehydrogenase -
  NQU59_RS02090 (NQU59_02090) thrC 441227..442366 (+) 1140 WP_004802157.1 threonine synthase -
  NQU59_RS02095 (NQU59_02095) pbpG 442498..443562 (-) 1065 WP_128568544.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NQU59_RS02100 (NQU59_02100) - 443774..444409 (+) 636 WP_257064781.1 response regulator -
  NQU59_RS02105 (NQU59_02105) pilS 444436..446001 (+) 1566 WP_257064782.1 PAS domain-containing sensor histidine kinase Regulator
  NQU59_RS02110 (NQU59_02110) pilR 446024..447460 (+) 1437 WP_005240229.1 sigma-54 dependent transcriptional regulator Regulator
  NQU59_RS02115 (NQU59_02115) - 447511..448686 (-) 1176 WP_096911339.1 S41 family peptidase -
  NQU59_RS02120 (NQU59_02120) gpmI 448696..450240 (-) 1545 WP_257064783.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59001.82 Da        Isoelectric Point: 6.6639

>NTDB_id=714382 NQU59_RS02105 WP_257064782.1 444436..446001(+) (pilS) [Acinetobacter colistiniresistens strain C-214]
MLGKIATSVSQTIYRLGVWYSGYRLIIAVSLLLIYLLTAEQLSGNYVYPFLYFYTLICYIAFNIFQLALLQLVPIQTSKQ
LIFIFLIDVIGLSLITFASGGPNLQLSLLYVIIIFSSAILLNAHLSLIITLFAVIMVVYQRFLGDFFDANNLTHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFNQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPTSLE
KTPLIKLQPDLFELIQFSNLEDGEEFSFESQQSPYIINVRVKHLLVPEQALVLLVLKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANSLLKDSDTHQLNMLSHMISKQAKRIDNIVQDTLAMARNKPTEPQVIELSPFLESLLNEDLADAK
HRIQLKQTEQLSILFDEKQLRQVLINLIRNALRHNSTDAPYIEVEVQLKDGRSCIDVIDFGTGVSKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYIERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=714382 NQU59_RS02105 WP_257064782.1 444436..446001(+) (pilS) [Acinetobacter colistiniresistens strain C-214]
ATGTTAGGGAAAATAGCAACATCGGTCTCTCAGACCATCTATCGGTTAGGCGTTTGGTATAGTGGCTATCGGCTTATTAT
TGCCGTTAGCCTGCTTTTAATTTATTTACTGACTGCCGAGCAACTTTCGGGTAATTATGTTTACCCCTTTTTATATTTCT
ATACTTTAATTTGCTATATCGCATTCAATATCTTTCAGCTCGCTTTACTACAGCTTGTTCCGATACAGACCTCGAAGCAA
CTGATTTTTATTTTTCTAATCGACGTAATTGGTCTCAGTTTAATTACGTTTGCTTCGGGTGGCCCTAATCTGCAACTGAG
CCTACTTTATGTCATTATTATTTTTTCTTCTGCGATTTTACTCAATGCACATCTTTCACTGATCATTACTTTATTTGCAG
TCATCATGGTAGTTTACCAACGCTTTTTAGGTGACTTCTTTGATGCCAATAATTTAACGCATCTCAGCAATAGTATTTTT
CTAGCCTTTTTGTTTTTCGTTGTGCATGCCATTGGCCGCATTGCCGTACAACGCTTTAAAATCTTAGAAACCCTGACATT
CAATCAGTCAATCGAGATTCATCAACTACAGAATATTAACCGCTATATTCTTGAACAGATTGAAGACGGCTATTTGGTTC
TTGATGAAAGCAATCATATCGTTTTAACCAATCCTGCAGCCAATACCCTGTTAGGGATTCATCTGCCGACCTCTTTGGAA
AAGACACCACTGATCAAATTACAGCCTGACTTGTTTGAATTGATCCAATTCAGCAATCTGGAAGATGGTGAAGAGTTCAG
TTTTGAGTCACAACAGAGCCCCTATATCATCAATGTTCGGGTCAAACACCTGCTTGTACCAGAACAAGCCCTGGTATTAT
TAGTTTTAAAAGATGCACAAAAACTGACACAACAAGTTCAACAGCTCAAACTGGCCGCCTTGGGTCAACTTTCTGCCAGT
ATTGCCCATGAAATTCGCAATCCATTGGCGGCTATTGTACAGGCCAATAGTTTATTAAAAGACAGCGACACCCACCAACT
GAACATGCTGTCTCACATGATCAGCAAGCAAGCCAAACGCATTGATAATATTGTGCAAGATACACTCGCCATGGCACGCA
ATAAGCCAACAGAGCCTCAAGTCATTGAGCTCAGCCCTTTCTTGGAAAGTTTGCTGAATGAAGATCTTGCCGATGCCAAA
CATCGTATTCAACTAAAACAGACGGAACAACTCAGCATTCTCTTTGATGAAAAACAATTACGCCAAGTGCTGATTAATTT
AATTCGAAATGCATTACGACATAATTCGACCGATGCTCCTTATATTGAAGTTGAAGTCCAGCTAAAAGATGGGCGAAGCT
GTATCGATGTCATCGATTTTGGGACGGGTGTCTCAAAACGAGATATTTCTCAGCTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACCTGTCTCATACTTTTTGTGAGGCAAATCATGCAAAGCTCACCTATATAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

PAS fold (PAS)

(203-298)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

64.341

99.04

0.637