Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   NP165_RS12090 Genome accession   NZ_CP102096
Coordinates   2542693..2543325 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio japonicus strain JCM 31412     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2537693..2548325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NP165_RS12065 (NP165_12065) - 2537867..2539789 (+) 1923 WP_257084155.1 ABC transporter ATP-binding protein -
  NP165_RS12070 (NP165_12070) - 2539786..2540268 (+) 483 WP_257084156.1 TIGR02444 family protein -
  NP165_RS12075 (NP165_12075) - 2540277..2541254 (+) 978 WP_257084157.1 hydrolase -
  NP165_RS12080 (NP165_12080) - 2541286..2541504 (+) 219 WP_257084158.1 YheU family protein -
  NP165_RS12085 (NP165_12085) - 2541580..2542449 (+) 870 WP_257084159.1 phosphoribulokinase -
  NP165_RS12090 (NP165_12090) crp 2542693..2543325 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  NP165_RS12095 (NP165_12095) - 2543490..2544281 (-) 792 WP_257084160.1 DUF1338 domain-containing protein -
  NP165_RS12100 (NP165_12100) astD 2544400..2545857 (-) 1458 WP_257084161.1 succinylglutamate-semialdehyde dehydrogenase -
  NP165_RS12105 (NP165_12105) astA 2545873..2546892 (-) 1020 WP_257084162.1 arginine N-succinyltransferase -
  NP165_RS12110 (NP165_12110) - 2546990..2548204 (-) 1215 WP_257084163.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=714364 NP165_RS12090 WP_004410522.1 2542693..2543325(+) (crp) [Vibrio japonicus strain JCM 31412]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=714364 NP165_RS12090 WP_004410522.1 2542693..2543325(+) (crp) [Vibrio japonicus strain JCM 31412]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTGATCCACGCGGGCGAGAAAGCAGAAACTTTGTACTACATTGTTAAAGGTTCTGTTGCAGTACTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTTATCGGTGAACTTGGTCTGTTCGAAGAAGAT
CAAGAACGTACAGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATCTCTTTCAAGAAATTCCGTCAGCTAAT
TCAAGTTAACCCAGACATTTTGATGCGCCTATCGGCACAGATGGCAAGTCGTCTTCAGGTGACGAGCCAGAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACAGGCCGTATCGCTCAAACTCTACTGAACCTAGCAAAACAACCTGATGCGATGACGCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATTGGACAGATCGTTGGCTGTTCTCGTGAGACAGTAGGCCGTAT
CCTGAAAATGCTTGAAGAGCAGAACCTAATTTCTGCGCACGGTAAGACAATCGTTGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467