Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   NQZ84_RS08640 Genome accession   NZ_CP102094
Coordinates   1765921..1766415 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain 12RC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1760921..1771415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQZ84_RS08625 (NQZ84_08625) - 1763694..1764638 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  NQZ84_RS08630 (NQZ84_08630) - 1764654..1765310 (+) 657 WP_079395770.1 DUF1129 domain-containing protein -
  NQZ84_RS08635 (NQZ84_08635) rpsR 1765649..1765888 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  NQZ84_RS08640 (NQZ84_08640) ssbA 1765921..1766415 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  NQZ84_RS08645 (NQZ84_08645) rpsF 1766427..1766717 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  NQZ84_RS08650 (NQZ84_08650) - 1766889..1767878 (-) 990 WP_044677897.1 lipoate--protein ligase -
  NQZ84_RS08655 (NQZ84_08655) - 1768012..1769202 (+) 1191 WP_044677895.1 DUF6688 domain-containing protein -
  NQZ84_RS08660 (NQZ84_08660) lpdA 1769253..1771013 (-) 1761 WP_044761748.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=714317 NQZ84_RS08640 WP_002942409.1 1765921..1766415(-) (ssbA) [Streptococcus suis strain 12RC1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=714317 NQZ84_RS08640 WP_002942409.1 1765921..1766415(-) (ssbA) [Streptococcus suis strain 12RC1]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTACAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366